RchiOBHm_Chr7g0203631

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
21291737 .. 21293317
1581 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGCCTCTCAGGAGATTGGTGGAGGTGGAACCGCCGAGCATACTGAGATACCTAATCGGAGCGGCGATCATGATGATCGGAGTCGTCTTACCCGTCGGTTACATGATGTTCCGTAACAAGCGTGTTCCTTCTGCCTCTTCCTACTCCAAACAGACGAACAAAGTTTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.44

Weight (kDa)

10.61

Isoelectric Point (pI)

81.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16695 AT4G16695 AT4G16695
malus_domestica MD04G1062500.v1.1 MD06G1056600.v1.1
prunus_persica Prupe.5G067000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203631
rosa_wichuraiana Rw7G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 2 cut(s) 32, 62
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 30
BseMII CTCAG 2 cut(s) 22, 35
Bsp143I GATC 2 cut(s) 66, 75
BspACI CCGC 2 cut(s) 32, 62
BspCNI CTCAG 2 cut(s) 21, 36
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 62
BssMI GATC 2 cut(s) 66, 75
Bst6I CTCTTC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 8, 44
BstKTI GATC 2 cut(s) 69, 78
BstMBI GATC 2 cut(s) 66, 75
CciI TCATGA 1 cut(s) 69
CviAII CATG 2 cut(s) 70, 103
DdeI CTNAG 2 cut(s) 8, 44
DpnI GATC 2 cut(s) 68, 77
DpnII GATC 2 cut(s) 66, 75
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
FaeI CATG 2 cut(s) 73, 106
FaiI YATR 4 cut(s) 41, 71, 104, 172
FatI CATG 2 cut(s) 69, 102
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 73, 106
HinfI GANTC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 59, 80
Hpy188III TCNNGA 2 cut(s) 10, 70
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 8, 44
Hsp92II CATG 2 cut(s) 73, 106
Kzo9I GATC 2 cut(s) 66, 75
LmnI GCTCC 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 98, 113
MalI GATC 2 cut(s) 68, 77
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 66, 75
MboII GAAGA 1 cut(s) 129
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 3 cut(s) 15, 16, 145
NdeII GATC 2 cut(s) 66, 75
NlaIII CATG 2 cut(s) 73, 106
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 30
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 66, 75
SchI GAGTC 1 cut(s) 90
SetI ASST 2 cut(s) 27, 54
SgeI CNNG 7 cut(s) 22, 48, 82, 104, 115, 130, 134
SsiI CCGC 2 cut(s) 32, 62
TauI GCSGC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.