RchiOBHm_Chr7g0218571

Ion channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
36749979 .. 36750502
524 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGAGATAGATATTGCAAAACTTGAATTTGACTTCATGGGACGTACGTCTGTTACATGCAGAAGTGGCAATCCTCTTGTTGACCTAAATAGGGTCTCAGTTTCGAAGGCGCGTGCTATCATTGTATTGGCATCCGATGAAAATGCAGATCAGGCTAATTCCTATTTCAAATGCCCTCTTACATTACCCCATGCAAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.38

Weight (kDa)

6.53

Isoelectric Point (pI)

13.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022814)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218571
rosa_samantha Rh7AG319600 Rh7BG311600 Rh7CG336500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 26, 169
Alw26I GTCTC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcoDI GTCTC 1 cut(s) 100
BmsI GCATC 1 cut(s) 140
BoxI GACNNNNGTC 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 112
BsiWI CGTACG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 1 cut(s) 112
BspT104I TTCGAA 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 100
BssMI GATC 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 66, 152
BstNSI RCATGY 1 cut(s) 60
BstPAI GACNNNNGTC 1 cut(s) 46
BstUI CGCG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 45
CviAII CATG 3 cut(s) 37, 57, 191
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 1 cut(s) 97
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 100
FaeI CATG 3 cut(s) 40, 60, 194
FaiI YATR 3 cut(s) 38, 58, 192
FaqI GGGAC 1 cut(s) 54
FatI CATG 3 cut(s) 36, 56, 190
FokI GGATG 1 cut(s) 118
GlaI GCGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 112
Hin1II CATG 3 cut(s) 40, 60, 194
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 43, 47
HpyCH4V TGCA 4 cut(s) 17, 60, 146, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 152
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 2 cut(s) 43, 47
Hsp92II CATG 3 cut(s) 40, 60, 194
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 1 cut(s) 137
LweI GCATC 1 cut(s) 140
MaeII ACGT 2 cut(s) 43, 47
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MluCI AATT 2 cut(s) 26, 157
MnlI CCTC 2 cut(s) 84, 186
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 66, 152
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 40, 60, 194
NspI RCATGY 1 cut(s) 60
NspV TTCGAA 1 cut(s) 104
Pfl23II CGTACG 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 46
PspLI CGTACG 1 cut(s) 44
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 148
SetI ASST 3 cut(s) 46, 50, 87
SfaNI GCATC 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 104
SgeI CNNG 7 cut(s) 35, 49, 69, 89, 123, 125, 164
Sse9I AATT 2 cut(s) 26, 157
TaiI ACGT 2 cut(s) 46, 50
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 26, 157
TspDTI ATGAA 2 cut(s) 25, 153
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.