Rh7BG311600

Ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0022814
Physical Location & Seq
Forward (+)
30139498 .. 30152785
13288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG311600.1

Sequence Viewer

Length: 432 bp
ATGGAGATAGATATTGCAAAACTTGAATTTGACTTCATGGGACGTACGTCTGTTACATGCAGAAGTGGCAATCCTCTTATACTTGCTGACCTAAATAAGGTCTCAATTTCGAAGGCGCGTGCTATCATTGTATTGGCATCCGATGAAAATGCAGATCAGAGATCGTTGAGTGACCTGGATAATGAGCCTCTGGTGAAGCTTGTTGGAGGAGAACTCACTGAAACAGTAGTAGCACATGATGTGATTGGGCGGTTAATGATACAGTGTGCTCTACAGCTTGGTCTAGCGCAGGGCGGACTATTAGACGGGATAACTCCCTCCCTTGAGTATAGGCGTGATTTCGAAATTCCAGAACGCGAACAACGAGGACTGCCCAACGTCTCGATTTCTCGCTCTCTCTTCTTCTTGCATCGCTCATCTTCAGTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Castor_Poll_mid

Protein Analysis

143

Amino Acids

15.7

Weight (kDa)

5.01

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022814)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218571
rosa_samantha Rh7AG319600 Rh7BG311600 Rh7CG336500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 118, 357
AciI CCGC 2 cut(s) 250, 294
AcsI RAATTY 2 cut(s) 26, 345
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 199, 277
AluI AGCT 2 cut(s) 199, 277
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 106, 385
ApoI RAATTY 2 cut(s) 26, 345
AspLEI GCGC 2 cut(s) 118, 289
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 2 cut(s) 110, 342
Bbv12I GWGCWC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 106, 385
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 146, 418
BoxI GACNNNNGTC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu14I TTCGAA 2 cut(s) 110, 342
BpuEI CTTGAG 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 222
Bsh1236I CGCG 2 cut(s) 118, 357
BsiHKAI GWGCWC 1 cut(s) 271
BsiWI CGTACG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 106, 385
BsmBI CGTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 106
Bsp119I TTCGAA 2 cut(s) 110, 342
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 154, 161
BspACI CCGC 2 cut(s) 250, 294
BspFNI CGCG 2 cut(s) 118, 357
BspT104I TTCGAA 2 cut(s) 110, 342
BspTNI GGTCTC 1 cut(s) 106
BssMI GATC 2 cut(s) 154, 161
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 226, 264
Bst6I CTCTTC 1 cut(s) 404
BstBI TTCGAA 2 cut(s) 110, 342
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 2 cut(s) 118, 357
BstHHI GCGC 2 cut(s) 118, 289
BstKTI GATC 2 cut(s) 157, 164
BstMAI GTCTC 2 cut(s) 106, 385
BstMBI GATC 2 cut(s) 154, 161
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 60
BstPAI GACNNNNGTC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 2 cut(s) 118, 357
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 3 cut(s) 216, 269, 429
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 118, 289
Csp6I GTAC 1 cut(s) 45
CviAII CATG 3 cut(s) 37, 57, 236
CviJI RGCY 3 cut(s) 187, 199, 277
CviKI_1 RGCY 3 cut(s) 187, 199, 277
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 156, 163
DpnII GATC 2 cut(s) 154, 161
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
EciI GGCGGA 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 3 cut(s) 40, 60, 239
FaiI YATR 5 cut(s) 38, 58, 80, 237, 330
FaqI GGGAC 1 cut(s) 54
FatI CATG 3 cut(s) 36, 56, 235
FokI GGATG 1 cut(s) 124
FspBI CTAG 1 cut(s) 284
GlaI GCGC 2 cut(s) 117, 288
HhaI GCGC 2 cut(s) 118, 289
Hin1II CATG 3 cut(s) 40, 60, 239
Hin6I GCGC 2 cut(s) 116, 287
HinP1I GCGC 2 cut(s) 116, 287
HindIII AAGCTT 1 cut(s) 197
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 142, 159
Hpy188III TCNNGA 2 cut(s) 350, 382
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 226, 264
HpyCH4IV ACGT 3 cut(s) 43, 47, 378
HpyCH4V TGCA 4 cut(s) 17, 60, 152, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 3 cut(s) 43, 47, 378
Hsp92II CATG 3 cut(s) 40, 60, 239
HspAI GCGC 2 cut(s) 116, 287
Kzo9I GATC 2 cut(s) 154, 161
LpnPI CCDG 5 cut(s) 161, 176, 188, 275, 363
LweI GCATC 2 cut(s) 146, 418
MaeI CTAG 1 cut(s) 284
MaeII ACGT 3 cut(s) 43, 47, 378
MaeIII GTNAC 3 cut(s) 52, 170, 424
MalI GATC 2 cut(s) 156, 163
MboI GATC 2 cut(s) 154, 161
MboII GAAGA 3 cut(s) 391, 394, 411
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 26, 105, 345
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 5 cut(s) 84, 198, 200, 328, 359
MseI TTAA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 2 cut(s) 118, 357
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 2 cut(s) 154, 161
NlaIII CATG 3 cut(s) 40, 60, 239
NmuCI GTSAC 2 cut(s) 170, 424
NspI RCATGY 1 cut(s) 60
NspV TTCGAA 2 cut(s) 110, 342
PcsI WCGNNNNNNNCGW 1 cut(s) 361
Pfl23II CGTACG 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspLI CGTACG 1 cut(s) 44
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 2 cut(s) 154, 161
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 271
SetI ASST 8 cut(s) 46, 50, 93, 102, 177, 201, 279, 381
SfaNI GCATC 2 cut(s) 146, 418
SfcI CTRYAG 1 cut(s) 272
SfuI TTCGAA 2 cut(s) 110, 342
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 26, 105, 345
SsiI CCGC 2 cut(s) 250, 294
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 226, 264
TaiI ACGT 3 cut(s) 46, 50, 381
TaqI TCGA 3 cut(s) 110, 342, 383
TasI AATT 3 cut(s) 26, 105, 345
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 3 cut(s) 223, 269, 429
TseFI GTSAC 2 cut(s) 170, 424
Tsp45I GTSAC 2 cut(s) 170, 424
TspDTI ATGAA 2 cut(s) 25, 159
TspRI CASTG 3 cut(s) 223, 269, 429
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 2 cut(s) 26, 345
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.