Rh7AG319600

Ion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
36176051 .. 36178752
2702 bp
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UTR
Exon/CDS
Intron
Rh7AG319600.1

Sequence Viewer

Length: 150 bp
ATGGAGATAGATATTGCAAAACTTGAATTTGACTTCATGGGACGTACGCCTGTTACATGCAGAAGTGGCAATCCTCTTATACTTGTTGACCTAAATAAGGTCTCAGTTTCGAAGGCGCGTGCTATCATTGTATTGGCATCCGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.36

Weight (kDa)

6.02

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022814)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218571
rosa_samantha Rh7AG319600 Rh7BG311600 Rh7CG336500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 118
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 106
BmsI GCATC 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 118
BsiWI CGTACG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 106
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 60
BstUI CGCG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 45
CviAII CATG 2 cut(s) 37, 57
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 95
FaeI CATG 2 cut(s) 40, 60
FaiI YATR 5 cut(s) 38, 58, 80, 146, 148
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 36, 56
FokI GGATG 1 cut(s) 124
FspEI CC 9 cut(s) 23, 24, 51, 63, 83, 87, 98, 104, 119
GlaI GCGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 40, 60
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 17, 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 2 cut(s) 40, 60
HspAI GCGC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 63
LweI GCATC 1 cut(s) 146
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 52
MluCI AATT 1 cut(s) 26
MnlI CCTC 1 cut(s) 84
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 66
NlaIII CATG 2 cut(s) 40, 60
NspI RCATGY 1 cut(s) 60
NspV TTCGAA 1 cut(s) 110
Pfl23II CGTACG 1 cut(s) 44
PspLI CGTACG 1 cut(s) 44
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SetI ASST 3 cut(s) 46, 93, 102
SfaNI GCATC 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 110
SgeI CNNG 7 cut(s) 35, 49, 62, 69, 95, 129, 131
Sse9I AATT 1 cut(s) 26
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.