Rh7CG336500

Ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0022814
Physical Location & Seq
Forward (+)
37577005 .. 37606317
29313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG336500.1

Sequence Viewer

Length: 630 bp
ATGGCGCGATCACGAAGAACAACATCTACTGATGTAGATTGGATCCGATTTGCAAGTGCGGTGATGGTTTGGTCTGCAGGAGTGGAGGCAGGCAGTATGGCTGCGGAACAGCTTTGCTCCAGGCCTGGATGCACTTCCCATGCTCATTGCAGGAAGGTGAAGGTCCAGCTGGTTGTCTGTGCCAGGGTGCAGGTCATGGCCTGCATAATTGATGACAGTGTACAAGCGGTGGCGAAGGGTTCGCTTCTCAAGCAGCTTGCTATAGCAAACAAGAATGTTGGTGGTGGTGTTGTTGTACTTGCTGAAAGAGACAAGGAGGAAATGGAGATAGATATTGCAAAACTTGAATTTGACTTCATGGGACGTACGCCTGTTACATGCAGAAGTGGCAATCCTCTTATACTTGTTGACCTAAATAAGAGAATCAATGCTACAACCCTAAAACAGGCATTCAAATTTTTTTTCCCTTCTTTTGATAAATGTACCGAAGTTCGAATATGGATCACTTCACACCCTAACACACTAGAAAGTTTTCACATACATGTTATAGTCCAACTCGAGAAGAAAGCATTCCAAAATATATTGACTTCTTCATCTGGCTCATTAATGAAACACTGGCACACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Castor_Poll_mid

Protein Analysis

209

Amino Acids

23.18

Weight (kDa)

9.17

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022814)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218571
rosa_samantha Rh7AG319600 Rh7BG311600 Rh7CG336500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 59, 104, 227
AclWI GGATC 3 cut(s) 37, 50, 509
AcsI RAATTY 2 cut(s) 347, 455
AfaI GTAC 4 cut(s) 222, 297, 367, 484
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 2 cut(s) 347, 454
AjnI CCWGG 3 cut(s) 119, 124, 182
AluBI AGCT 3 cut(s) 112, 169, 256
AluI AGCT 3 cut(s) 112, 169, 256
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 3 cut(s) 37, 50, 509
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 2 cut(s) 122, 198
ApeKI GCWGC 2 cut(s) 101, 253
ApoI RAATTY 2 cut(s) 347, 455
AseI ATTAAT 1 cut(s) 605
Asp700I GAANNNNTTC 2 cut(s) 531, 569
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 73, 169
AsuII TTCGAA 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 557
AvaII GGWCC 1 cut(s) 163
BamHI GGATCC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 88, 265
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 3 cut(s) 121, 126, 184
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 75, 261
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 2 cut(s) 102, 254
BlsI GCNGC 2 cut(s) 103, 255
Bme1390I CCNGG 3 cut(s) 121, 126, 184
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 3 cut(s) 121, 126, 184
BmsI GCATC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 3 cut(s) 121, 126, 184
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 620
BseXI GCAGC 2 cut(s) 88, 265
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 124, 200
BsiHKCI CYCGRG 1 cut(s) 557
BsiWI CGTACG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 2 cut(s) 449, 569
BsnI GGCC 2 cut(s) 124, 200
BsoBI CYCGRG 1 cut(s) 557
Bsp119I TTCGAA 1 cut(s) 493
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 8, 42, 501
BspACI CCGC 3 cut(s) 59, 104, 227
BspANI GGCC 2 cut(s) 124, 200
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 3 cut(s) 37, 50, 509
BspT104I TTCGAA 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 8, 42, 501
Bst2UI CCWGG 3 cut(s) 121, 126, 184
Bst4CI ACNGT 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 3 cut(s) 91, 202, 258
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 11, 45, 504
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 3 cut(s) 8, 42, 501
BstMWI GCNNNNNNNGC 2 cut(s) 250, 387
BstNI CCWGG 3 cut(s) 121, 126, 184
BstNSI RCATGY 2 cut(s) 381, 545
BstSCI CCNGG 3 cut(s) 119, 124, 182
BstSFI CTRYAG 2 cut(s) 75, 261
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 88, 265
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 2 cut(s) 124, 200
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 223, 613, 621
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 91, 202, 258
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 4 cut(s) 221, 296, 366, 483
CviAII CATG 5 cut(s) 140, 196, 358, 378, 542
CviJI RGCY 7 cut(s) 101, 112, 124, 169, 200, 256, 600
CviKI_1 RGCY 7 cut(s) 101, 112, 124, 169, 200, 256, 600
CviQI GTAC 4 cut(s) 221, 296, 366, 483
DpnI GATC 3 cut(s) 10, 44, 503
DpnII GATC 3 cut(s) 8, 42, 501
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 557
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 119, 124, 182
FaeI CATG 5 cut(s) 143, 199, 361, 381, 545
FaqI GGGAC 1 cut(s) 375
FatI CATG 5 cut(s) 139, 195, 357, 377, 541
Fnu4HI GCNGC 2 cut(s) 102, 254
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 102, 254
FspBI CTAG 1 cut(s) 524
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 102, 254
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 2 cut(s) 124, 200
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 143, 199, 361, 381, 545
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 1 cut(s) 423
HphI GGTGA 2 cut(s) 73, 169
Hpy166II GTNNAC 2 cut(s) 221, 409
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 12, 559
Hpy8I GTNNAC 2 cut(s) 221, 409
HpyAV CCTTC 4 cut(s) 148, 154, 229, 477
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 9 cut(s) 53, 77, 132, 150, 190, 204, 338, 381, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 387
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 5 cut(s) 143, 199, 361, 381, 545
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 8, 42, 501
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 88, 265
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 373
MalI GATC 3 cut(s) 10, 44, 503
MboI GATC 3 cut(s) 8, 42, 501
MboII GAAGA 3 cut(s) 27, 574, 582
MflI RGATCY 1 cut(s) 42
MluCI AATT 3 cut(s) 207, 347, 455
MmeI TCCRAC 1 cut(s) 577
MnlI CCTC 3 cut(s) 79, 310, 405
MroXI GAANNNNTTC 2 cut(s) 531, 569
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 121, 126, 184
Mva1269I GAATGC 2 cut(s) 449, 569
MvaI CCWGG 3 cut(s) 121, 126, 184
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 250, 387
NdeII GATC 3 cut(s) 8, 42, 501
NlaIII CATG 5 cut(s) 143, 199, 361, 381, 545
NlaIV GGNNCC 1 cut(s) 44
NspI RCATGY 2 cut(s) 381, 545
NspV TTCGAA 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 557
PceI AGGCCT 1 cut(s) 124
PciI ACATGT 1 cut(s) 541
PctI GAATGC 2 cut(s) 449, 569
PdmI GAANNNNTTC 2 cut(s) 531, 569
PfeI GAWTC 1 cut(s) 423
Pfl23II CGTACG 1 cut(s) 365
PkrI GCNGC 2 cut(s) 103, 255
PscI ACATGT 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 605
Psp6I CCWGG 3 cut(s) 119, 124, 182
PspGI CCWGG 3 cut(s) 119, 124, 182
PspLI CGTACG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 163
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 4 cut(s) 222, 297, 367, 484
RsaNI GTAC 4 cut(s) 221, 296, 366, 483
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 2 cut(s) 102, 254
Sau3AI GATC 3 cut(s) 8, 42, 501
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 3 cut(s) 121, 126, 184
SetI ASST 8 cut(s) 114, 159, 165, 171, 195, 258, 367, 414
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 2 cut(s) 75, 261
Sfr274I CTCGAG 1 cut(s) 557
SfuI TTCGAA 1 cut(s) 493
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 248, 557
SmoI CTYRAG 2 cut(s) 248, 557
Sse9I AATT 3 cut(s) 207, 347, 455
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 59, 104, 227
SspMI CTAG 1 cut(s) 524
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 119, 124, 182
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 493, 558
TasI AATT 3 cut(s) 207, 347, 455
TatI WGTACW 2 cut(s) 220, 295
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 3 cut(s) 223, 620, 628
TseI GCWGC 2 cut(s) 101, 253
TspDTI ATGAA 3 cut(s) 346, 582, 623
TspRI CASTG 3 cut(s) 223, 620, 628
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 605
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 2 cut(s) 347, 455
XceI RCATGY 2 cut(s) 381, 545
XhoI CTCGAG 1 cut(s) 557
XmnI GAANNNNTTC 2 cut(s) 531, 569
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.