RchiOBHm_Chr7g0238031

9-cis-epoxycarotenoid dioxygenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
63370706 .. 63371617
912 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGACATGTCGTACCAAGTGCGGATCACTCCCTCCGGCGACCTTGAAACAGTGGGGCCGCTACGACTTCGAAACACAACTCGGGTCCATAATGATCGCCCACCCGAAAGTCGACCAGGTGTCCGGCCACCTCCACACGCTCAGCTACGACTTCGTGAAGAGGCCTTACCTGAAATACTTCCAATTCTCCGCCGACGGGGAGAAGTCTCCAAACGTGGAAATCCCTCTGGCGGCGCCCACAATGATGCACGACTTCACCATCATCGAAAACTTCGTCGTGATTCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCACCGACGACCCGCCGGTGATCTACAACAAGAACAAGAAATCCAGGTTAGGAATTCTGGAGAAAAATGCCACAAACGCTGATGATATTATTTGGGTTGAATGCCCGGACACTTTCTGCTTCCACTTGTGGAATGCGTGGGAGGAGCTTCAGTCTGATGAGGTGGTTGTGATCAGGTCATGCATGACTCCACCAGACTCGATATTTAATGAGAATGACGAGTGCTTGAAGAGTGTGTTGTCCGAAATCCGGCTCAATATGAAAACCGGCGAGTCGACTCGGAGGCCGATTATTTCGGAGGAGTTGGAGCATGTGAACTTAGAGGCCGGAATGGTGAATCGGAACCGGCTCGGGAGAAAAACTCGGTATGCTTATCTCGCCATTGCTGAACCGTGGCCGAAAGTTTCTAGCTTCGCCAAGGTGGATCTTTTTACTGGCCAAGTAAAAAAGCATATTTACGGGGATAGGAAGTTTGGTGGTGAGCCCTTCTTTCTTCCTTCGGGTTCATGTGGGGAAGAAGATGGTGGGTATATCCTGAGCTTTGTTCATGACGAGAAGACGTGGAAGTCGGAGCTTCAGATTGTGAATGCGTAA

Protein Analysis

303

Amino Acids

34.62

Weight (kDa)

5.56

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 10 - 303 7e-69 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025124)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0238031
rosa_multiflora Rmu_sc0007698.1_g000020 Rmu_sc0030207.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
AasI GACNNNNNNGTC 1 cut(s) 883
Acc36I ACCTGC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 232
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 2 cut(s) 111, 593
AciI CCGC 5 cut(s) 21, 58, 189, 230, 332
AclWI GGATC 2 cut(s) 31, 750
AcoI YGGCCR 3 cut(s) 124, 713, 754
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 2 cut(s) 452, 878
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 4 cut(s) 195, 229, 295, 567
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 4 cut(s) 46, 304, 419, 547
AhdI GACNNNNNGTC 1 cut(s) 118
AjiI CACGTC 1 cut(s) 879
AjnI CCWGG 2 cut(s) 114, 362
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 6 cut(s) 144, 307, 466, 729, 858, 892
AluI AGCT 6 cut(s) 144, 307, 466, 729, 858, 892
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 31, 750
Ama87I CYCGRG 2 cut(s) 80, 668
AoxI GGCC 7 cut(s) 55, 124, 161, 602, 642, 713, 754
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 55, 84
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 5 cut(s) 247, 313, 349, 664, 809
AsuII TTCGAA 1 cut(s) 69
AvaI CYCGRG 2 cut(s) 80, 668
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 804
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 881
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 266, 833
BciT130I CCWGG 2 cut(s) 116, 364
BclI TGATCA 2 cut(s) 318, 489
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 3 cut(s) 58, 231, 308
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 3 cut(s) 59, 232, 309
Bme1390I CCNGG 3 cut(s) 116, 364, 425
Bme18I GGWCC 1 cut(s) 84
BmeRI GACNNNNNGTC 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 80, 668
BmgBI CACGTC 1 cut(s) 879
BmgT120I GGNCC 2 cut(s) 55, 84
BmiI GGNNCC 4 cut(s) 56, 85, 234, 662
BmrFI CCNGG 3 cut(s) 116, 364, 425
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 881
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 854
Bpu1102I GCTNAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 710, 735
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 229, 295, 567
Bse118I RCCGGY 3 cut(s) 334, 584, 663
Bse1I ACTGG 1 cut(s) 757
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 2 cut(s) 116, 364
BseDI CCNNGG 2 cut(s) 710, 735
BseLI CCNNNNNNNGG 4 cut(s) 195, 229, 295, 567
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 2 cut(s) 154, 845
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 2 cut(s) 476, 632
BseXI GCAGC 1 cut(s) 294
BshFI GGCC 7 cut(s) 57, 126, 163, 604, 644, 715, 756
BshNI GGYRCC 1 cut(s) 232
BsiHKCI CYCGRG 2 cut(s) 80, 668
BsiSI CCGG 8 cut(s) 35, 123, 335, 425, 568, 585, 645, 664
BslI CCNNNNNNNGG 4 cut(s) 195, 229, 295, 567
BsmAI GTCTC 1 cut(s) 210
BsmI GAATGC 3 cut(s) 425, 457, 910
BsnI GGCC 7 cut(s) 57, 126, 163, 604, 644, 715, 756
BsoBI CYCGRG 2 cut(s) 80, 668
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 804
Bsp143I GATC 6 cut(s) 23, 93, 318, 339, 489, 742
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 5 cut(s) 21, 58, 189, 230, 332
BspANI GGCC 7 cut(s) 57, 126, 163, 604, 644, 715, 756
BspCNI CTCAG 2 cut(s) 153, 846
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 4 cut(s) 56, 85, 234, 662
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 2 cut(s) 31, 750
BspT104I TTCGAA 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 3 cut(s) 334, 584, 663
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 3 cut(s) 334, 584, 663
BssECI CCNNGG 2 cut(s) 710, 735
BssMI GATC 6 cut(s) 23, 93, 318, 339, 489, 742
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 116, 364
Bst4CI ACNGT 2 cut(s) 51, 711
Bst6I CTCTTC 2 cut(s) 152, 542
BstACI GRCGYC 1 cut(s) 233
BstBI TTCGAA 1 cut(s) 69
BstDEI CTNAG 3 cut(s) 140, 637, 854
BstDSI CCRYGG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 6 cut(s) 26, 96, 321, 342, 492, 745
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 6 cut(s) 23, 93, 318, 339, 489, 742
BstMWI GCNNNNNNNGC 2 cut(s) 395, 695
BstNI CCWGG 2 cut(s) 116, 364
BstNSI RCATGY 2 cut(s) 9, 632
BstSCI CCNGG 3 cut(s) 114, 362, 423
BstSFI CTRYAG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 7 cut(s) 57, 126, 163, 604, 644, 715, 756
BtgI CCRYGG 1 cut(s) 710
BtrI CACGTC 1 cut(s) 879
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 3 cut(s) 334, 584, 663
Cfr13I GGNCC 2 cut(s) 55, 84
CsiI ACCWGGT 1 cut(s) 114
Csp6I GTAC 1 cut(s) 12
CviAII CATG 6 cut(s) 6, 498, 502, 629, 825, 866
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 3 cut(s) 140, 637, 854
DinI GGCGCC 1 cut(s) 234
DpnI GATC 6 cut(s) 25, 95, 320, 341, 491, 744
DpnII GATC 6 cut(s) 23, 93, 318, 339, 489, 742
DrdI GACNNNNNNGTC 1 cut(s) 883
DriI GACNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 3 cut(s) 124, 713, 754
Eam1104I CTCTTC 2 cut(s) 152, 542
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 2 cut(s) 152, 542
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 735
Eco147I AGGCCT 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 452, 878
Eco88I CYCGRG 2 cut(s) 80, 668
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 2 cut(s) 114, 362
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 804
EgeI GGCGCC 1 cut(s) 234
EheI GGCGCC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 6 cut(s) 9, 501, 505, 632, 828, 869
FatI CATG 6 cut(s) 5, 497, 501, 628, 824, 865
FauI CCCGC 1 cut(s) 339
FbaI TGATCA 2 cut(s) 318, 489
FblI GTMKAC 2 cut(s) 111, 593
Fnu4HI GCNGC 3 cut(s) 58, 231, 308
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 3 cut(s) 58, 231, 308
FspBI CTAG 1 cut(s) 726
GlaI GCGC 1 cut(s) 234
GluI GCNGC 3 cut(s) 58, 231, 308
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 7 cut(s) 57, 126, 163, 604, 644, 715, 756
HapII CCGG 8 cut(s) 35, 123, 335, 425, 568, 585, 645, 664
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 6 cut(s) 9, 501, 505, 632, 828, 869
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 2 cut(s) 112, 594
HindII GTYRAC 2 cut(s) 112, 594
HinfI GANTC 6 cut(s) 280, 505, 515, 590, 595, 655
HpaII CCGG 8 cut(s) 35, 123, 335, 425, 568, 585, 645, 664
HphI GGTGA 5 cut(s) 247, 313, 349, 664, 809
Hpy166II GTNNAC 3 cut(s) 112, 594, 634
Hpy188I TCNGA 7 cut(s) 475, 562, 600, 616, 660, 889, 897
Hpy188III TCNNGA 7 cut(s) 154, 277, 284, 377, 670, 853, 866
Hpy8I GTNNAC 3 cut(s) 112, 594, 634
Hpy99I CGWCG 3 cut(s) 197, 278, 329
HpyAV CCTTC 2 cut(s) 814, 825
HpyCH4III ACNGT 2 cut(s) 51, 711
HpyCH4IV ACGT 2 cut(s) 213, 878
HpyCH4V TGCA 3 cut(s) 247, 310, 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 695
HpyF3I CTNAG 3 cut(s) 140, 637, 854
HpySE526I ACGT 2 cut(s) 213, 878
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 6 cut(s) 9, 501, 505, 632, 828, 869
HspAI GCGC 1 cut(s) 233
KasI GGCGCC 1 cut(s) 232
Ksp22I TGATCA 2 cut(s) 318, 489
Kzo9I GATC 6 cut(s) 23, 93, 318, 339, 489, 742
LmnI GCTCC 3 cut(s) 463, 625, 889
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 234
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 1 cut(s) 726
MaeII ACGT 2 cut(s) 213, 878
MalI GATC 6 cut(s) 25, 95, 320, 341, 491, 744
MboI GATC 6 cut(s) 23, 93, 318, 339, 489, 742
MboII GAAGA 6 cut(s) 169, 559, 803, 845, 848, 886
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 804
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 2 cut(s) 182, 372
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 233
MlyI GAGTC 4 cut(s) 499, 509, 589, 599
MmeI TCCRAC 2 cut(s) 603, 867
MnlI CCTC 9 cut(s) 42, 140, 153, 234, 454, 472, 594, 610, 634
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 756
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 756
MspI CCGG 8 cut(s) 35, 123, 335, 425, 568, 585, 645, 664
MspR9I CCNGG 3 cut(s) 116, 364, 425
Mva1269I GAATGC 3 cut(s) 425, 457, 910
MvaI CCWGG 2 cut(s) 116, 364
MwoI GCNNNNNNNGC 2 cut(s) 395, 695
NarI GGCGCC 1 cut(s) 233
NciI CCSGG 1 cut(s) 425
NdeII GATC 6 cut(s) 23, 93, 318, 339, 489, 742
NlaIII CATG 6 cut(s) 9, 501, 505, 632, 828, 869
NlaIV GGNNCC 4 cut(s) 56, 85, 234, 662
NsiI ATGCAT 1 cut(s) 503
NspI RCATGY 2 cut(s) 9, 632
NspV TTCGAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 865
PaqCI CACCTGC 1 cut(s) 283
PceI AGGCCT 1 cut(s) 163
PciI ACATGT 1 cut(s) 5
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 282
PctI GAATGC 3 cut(s) 425, 457, 910
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 280, 655
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 3 cut(s) 59, 232, 309
PleI GAGTC 4 cut(s) 499, 509, 589, 598
PluTI GGCGCC 1 cut(s) 236
PpsI GAGTC 4 cut(s) 499, 509, 589, 598
PscI ACATGT 1 cut(s) 5
Psp6I CCWGG 2 cut(s) 114, 362
PspGI CCWGG 2 cut(s) 114, 362
PspN4I GGNNCC 4 cut(s) 56, 85, 234, 662
PspPI GGNCC 2 cut(s) 55, 84
PstI CTGCAG 1 cut(s) 312
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 242
SalI GTCGAC 2 cut(s) 110, 592
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 3 cut(s) 58, 231, 308
Sau3AI GATC 6 cut(s) 23, 93, 318, 339, 489, 742
Sau96I GGNCC 2 cut(s) 55, 84
SchI GAGTC 4 cut(s) 499, 509, 589, 599
ScrFI CCNGG 3 cut(s) 116, 364, 425
SduI GDGCHC 1 cut(s) 804
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 308
SfoI GGCGCC 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 334
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 2 cut(s) 182, 372
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 5 cut(s) 21, 58, 189, 230, 332
SspDI GGCGCC 1 cut(s) 232
SspMI CTAG 1 cut(s) 726
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 3 cut(s) 114, 362, 423
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 2 cut(s) 51, 711
TaiI ACGT 2 cut(s) 216, 881
TaqI TCGA 5 cut(s) 69, 111, 264, 518, 593
TasI AATT 2 cut(s) 182, 372
TauI GCSGC 2 cut(s) 60, 233
TfiI GAWTC 2 cut(s) 280, 655
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 56
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 593, 813, 854
TspRI CASTG 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 372
XceI RCATGY 2 cut(s) 9, 632
XmiI GTMKAC 2 cut(s) 111, 593
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 726
Zsp2I ATGCAT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.