Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007698.1

Orthogroup ID

OG0025124

Physical Location & Seq

Genomic Coordinates Reverse (-)

77970 .. 78789

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007698.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgattgcccacccgaaagtcgacccgatgtccggccacctccacaagcttagctacgacgtcgtgaagaggccttacctgaaatacttccaattctccgctgacgaggagaagtctccagacatggaaatccctctggcggcgcccacaatgatgcacgacttcgccatcaccgaaaacttcgtcttgattcccgaccaacaggtggtgttcaagctgcaggagatgatcaccggcgggtcgacggtgatctacgacaagaacaagaaatccaggttcgaaattctggtgaaaaaggccacaaatgctgatgacattatttgggttgaatgcccagacactttctgcttccatttgtggaatgcgtgggaggagcctgagtccgatgaggtggttgtgatcgggtcatgcatgactccaccggactcgatatttaatgagaatgacaagtgcttgactcgtgttgttcgaaatccggctcaatatgaaaaccgacgagtcgactcagaggtcgattatttcggaggagtcggagcatgtgaacttggagggcggaatgtaaaaaagcatatttacggggacaggaagtttggtggtgagcccttctttcttccttccggttcatatggggaagaagatggtgggtatatcctgagctttgttcacgacgagaagacgtggaagtcggagcttcagattgtgaatgcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

236

Amino Acids

26.9

Weight (kDa)

4.97

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025124)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0238031
rosa_multiflora	Rmu_sc0007698.1_g000020 Rmu_sc0030207.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	509, 682
AatII	GACGTC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccI	GTMKAC	3 cut(s)	21, 242, 501
AciI	CCGC	4 cut(s)	99, 140, 237, 553
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	677
AcyI	GRCGYC	2 cut(s)	60, 143
AfiI	CCNNNNNNNGG	3 cut(s)	32, 139, 205
AgsI	TTSAA	2 cut(s)	214, 329
AhdI	GACNNNNNGTC	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	678
AjnI	CCWGG	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	49, 54, 217, 657, 691
AluI	AGCT	5 cut(s)	49, 54, 217, 657, 691
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	3 cut(s)	34, 71, 297
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	282
ArsI	GACNNNNNNTTYG	4 cut(s)	168, 200, 572, 604
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	163, 223, 259, 301, 608
AsuII	TTCGAA	2 cut(s)	279, 469
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	2 cut(s)	176, 632
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	2 cut(s)	141, 218
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	2 cut(s)	142, 219
Bme1390I	CCNGG	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	678
BmiI	GGNNCC	2 cut(s)	144, 375
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	50
Bpu14I	TTCGAA	2 cut(s)	279, 469
BsaHI	GRCGYC	2 cut(s)	60, 143
BsaWI	WCCGGW	2 cut(s)	421, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 139, 205
Bse118I	RCCGGY	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	32, 139, 205
BseMII	CTCAG	3 cut(s)	369, 519, 644
BseRI	GAGGAG	3 cut(s)	122, 386, 540
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	3 cut(s)	36, 73, 299
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	5 cut(s)	33, 234, 422, 476, 618
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	32, 139, 205
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	3 cut(s)	335, 367, 709
BsnI	GGCC	3 cut(s)	36, 73, 299
Bsp119I	TTCGAA	2 cut(s)	279, 469
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	228, 249, 399
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	4 cut(s)	99, 140, 237, 553
BspANI	GGCC	3 cut(s)	36, 73, 299
BspCNI	CTCAG	3 cut(s)	370, 518, 645
BspLI	GGNNCC	2 cut(s)	144, 375
BspMAI	CTGCAG	1 cut(s)	222
BspT104I	TTCGAA	2 cut(s)	279, 469
BspT107I	GGYRCC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	3 cut(s)	228, 249, 399
BssNI	GRCGYC	2 cut(s)	60, 143
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	2 cut(s)	60, 143
BstBI	TTCGAA	2 cut(s)	279, 469
BstDEI	CTNAG	4 cut(s)	50, 378, 505, 653
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	231, 252, 402
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	3 cut(s)	228, 249, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	680
BsuRI	GGCC	3 cut(s)	36, 73, 299
BtrI	CACGTC	1 cut(s)	678
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	233
CviAII	CATG	4 cut(s)	124, 408, 412, 537
DdeI	CTNAG	4 cut(s)	50, 378, 505, 653
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	3 cut(s)	230, 251, 401
DpnII	GATC	3 cut(s)	228, 249, 399
DrdI	GACNNNNNNGTC	2 cut(s)	509, 682
DriI	GACNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	2 cut(s)	509, 682
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	568
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	603
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	4 cut(s)	127, 411, 415, 540
FaiI	YATR	9 cut(s)	125, 409, 413, 486, 538, 570, 625, 627, 648
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	4 cut(s)	123, 407, 411, 536
FauI	CCCGC	1 cut(s)	230
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	3 cut(s)	21, 242, 501
Fnu4HI	GCNGC	2 cut(s)	141, 218
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	141, 218
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	141, 218
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	36, 73, 299
HapII	CCGG	5 cut(s)	33, 234, 422, 476, 618
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	60, 143
Hin1II	CATG	4 cut(s)	127, 411, 415, 540
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	3 cut(s)	22, 243, 502
HindII	GTYRAC	3 cut(s)	22, 243, 502
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	8 cut(s)	190, 380, 415, 425, 457, 498, 503, 528
HpaII	CCGG	5 cut(s)	33, 234, 422, 476, 618
HphI	GGTGA	5 cut(s)	163, 223, 259, 301, 608
Hpy166II	GTNNAC	5 cut(s)	22, 243, 502, 542, 664
Hpy188I	TCNGA	6 cut(s)	385, 508, 524, 533, 688, 696
Hpy188III	TCNNGA	6 cut(s)	64, 119, 187, 194, 652, 665
Hpy8I	GTNNAC	5 cut(s)	22, 243, 502, 542, 664
Hpy99I	CGWCG	5 cut(s)	62, 65, 247, 498, 671
HpyAV	CCTTC	2 cut(s)	613, 624
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	60, 677
HpyCH4V	TGCA	3 cut(s)	157, 220, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	4 cut(s)	50, 378, 505, 653
HpySE526I	ACGT	2 cut(s)	60, 677
Hsp92I	GRCGYC	2 cut(s)	60, 143
Hsp92II	CATG	4 cut(s)	127, 411, 415, 540
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 249, 399
LmnI	GCTCC	3 cut(s)	373, 533, 688
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	2 cut(s)	60, 677
MalI	GATC	3 cut(s)	230, 251, 401
MboI	GATC	3 cut(s)	228, 249, 399
MboII	GAAGA	5 cut(s)	79, 602, 644, 647, 685
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	2 cut(s)	92, 282
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	7 cut(s)	389, 409, 419, 451, 497, 507, 537
MmeI	TCCRAC	2 cut(s)	511, 666
MnlI	CCTC	9 cut(s)	50, 63, 100, 144, 364, 382, 502, 518, 542
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	5 cut(s)	33, 234, 422, 476, 618
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	3 cut(s)	335, 367, 709
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	305
NarI	GGCGCC	1 cut(s)	143
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	3 cut(s)	228, 249, 399
NlaIII	CATG	4 cut(s)	127, 411, 415, 540
NlaIV	GGNNCC	2 cut(s)	144, 375
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	540
NspV	TTCGAA	2 cut(s)	279, 469
PceI	AGGCCT	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 466
PctI	GAATGC	3 cut(s)	335, 367, 709
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	142, 219
PleI	GAGTC	7 cut(s)	388, 409, 419, 451, 497, 506, 536
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	7 cut(s)	388, 409, 419, 451, 497, 506, 536
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	144, 375
PstI	CTGCAG	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	152
SalI	GTCGAC	3 cut(s)	20, 241, 500
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	141, 218
Sau3AI	GATC	3 cut(s)	228, 249, 399
SchI	GAGTC	7 cut(s)	389, 409, 419, 451, 497, 507, 537
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	144
SfuI	TTCGAA	2 cut(s)	279, 469
SgrAI	CRCCGGYG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	92, 282
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	4 cut(s)	99, 140, 237, 553
SspDI	GGCGCC	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	63, 680
TaqI	TCGA	7 cut(s)	21, 242, 279, 428, 469, 501, 513
TasI	AATT	2 cut(s)	92, 282
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	501, 612
Van91I	CCANNNNNTGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	3 cut(s)	21, 242, 501
XmnI	GAANNNNTTC	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.