Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030207.1

Orthogroup ID

OG0025124

Physical Location & Seq

Genomic Coordinates Forward (+)

850 .. 1500

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030207.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgattgcccacccgaaagtcgacccgatgtccggccacctccacacgctcagctacgacgtcgtgaagaggccttacctgaaatacttccaattctccgctgacgaggagaagtctccagacgtggaaatccctctggcggcgcccacaatgatgcacgacttcgccatcaccgaaaacttcgtcttgattcccgaccagcaggtggtgttcaagctgcaggagatgatcaccggcgggtcgacggtgatctacgacaagaacaagaaatccaggttcgaaattctggtgaaaaatgccacaaacgctgatgacattatttgggttgaatgcccagacactttctgcttccatttgtggaatgcgtgggaggagcctgagtccgatgaggtggttgtgatcgggtcacgcatgactccaccggactcgatatttaatgagaatgacaagtgcttgaagagtgtgttgttcgaaatccggctcaatatgaaaaccgacgagtcgactcggaggtcgattatttcggaggagtcggagcatgtgaacttggagggcggaatggtgaatcgaaaccggctcgggagaaagactcagtatgcttatctcgccattgctgaaccgtggccaaaagtttctggtttcgccaaggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

217

Amino Acids

24.89

Weight (kDa)

5.19

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025124)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0238031
rosa_multiflora	Rmu_sc0007698.1_g000020 Rmu_sc0030207.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
AasI	GACNNNNNNGTC	1 cut(s)	511
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccI	GTMKAC	3 cut(s)	21, 242, 503
AciI	CCGC	4 cut(s)	99, 140, 237, 555
AcoI	YGGCCR	2 cut(s)	34, 623
AcsI	RAATTY	1 cut(s)	282
AcyI	GRCGYC	2 cut(s)	60, 143
AfiI	CCNNNNNNNGG	3 cut(s)	32, 139, 205
AgsI	TTSAA	3 cut(s)	214, 329, 457
AhdI	GACNNNNNGTC	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	54, 217
AluI	AGCT	2 cut(s)	54, 217
Alw26I	GTCTC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	34, 71, 623
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	282
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	163, 223, 259, 301, 574
AsuII	TTCGAA	2 cut(s)	279, 471
AvaI	CYCGRG	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	141, 218
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	2 cut(s)	142, 219
Bme1390I	CCNGG	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	144, 375
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	50
Bpu14I	TTCGAA	2 cut(s)	279, 471
BsaHI	GRCGYC	2 cut(s)	60, 143
BsaJI	CCNNGG	2 cut(s)	620, 645
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 139, 205
Bse118I	RCCGGY	2 cut(s)	233, 573
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	620, 645
BseLI	CCNNNNNNNGG	3 cut(s)	32, 139, 205
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	64, 369, 605
BseRI	GAGGAG	3 cut(s)	122, 386, 542
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	3 cut(s)	36, 73, 625
BshNI	GGYRCC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	5 cut(s)	33, 234, 422, 478, 574
BslI	CCNNNNNNNGG	3 cut(s)	32, 139, 205
BsmAI	GTCTC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	335, 367
BsnI	GGCC	3 cut(s)	36, 73, 625
BsoBI	CYCGRG	1 cut(s)	578
Bsp119I	TTCGAA	2 cut(s)	279, 471
Bsp143I	GATC	3 cut(s)	228, 249, 399
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	4 cut(s)	99, 140, 237, 555
BspANI	GGCC	3 cut(s)	36, 73, 625
BspCNI	CTCAG	3 cut(s)	63, 370, 604
BspLI	GGNNCC	2 cut(s)	144, 375
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	193
BspT104I	TTCGAA	2 cut(s)	279, 471
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	2 cut(s)	233, 573
BssAI	RCCGGY	2 cut(s)	233, 573
BssECI	CCNNGG	2 cut(s)	620, 645
BssMI	GATC	3 cut(s)	228, 249, 399
BssNI	GRCGYC	2 cut(s)	60, 143
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	247, 621
Bst6I	CTCTTC	2 cut(s)	62, 452
BstACI	GRCGYC	2 cut(s)	60, 143
BstBI	TTCGAA	2 cut(s)	279, 471
BstDEI	CTNAG	3 cut(s)	50, 378, 591
BstDSI	CCRYGG	1 cut(s)	620
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	231, 252, 402
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	3 cut(s)	228, 249, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 605
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	36, 73, 625
BtgI	CCRYGG	1 cut(s)	620
BtrI	CACGTC	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	233, 573
CviAII	CATG	2 cut(s)	412, 539
CviJI	RGCY	8 cut(s)	36, 54, 73, 217, 376, 481, 577, 625
CviKI_1	RGCY	8 cut(s)	36, 54, 73, 217, 376, 481, 577, 625
DdeI	CTNAG	3 cut(s)	50, 378, 591
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	3 cut(s)	230, 251, 401
DpnII	GATC	3 cut(s)	228, 249, 399
DrdI	GACNNNNNNGTC	1 cut(s)	511
DriI	GACNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	34, 623
Eam1104I	CTCTTC	2 cut(s)	62, 452
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	2 cut(s)	62, 452
EciI	GGCGGA	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	645
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	2 cut(s)	415, 542
FaiI	YATR	4 cut(s)	413, 488, 540, 597
FatI	CATG	2 cut(s)	411, 538
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	3 cut(s)	21, 242, 503
Fnu4HI	GCNGC	2 cut(s)	141, 218
Fsp4HI	GCNGC	2 cut(s)	141, 218
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	141, 218
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	36, 73, 625
HapII	CCGG	5 cut(s)	33, 234, 422, 478, 574
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	60, 143
Hin1II	CATG	2 cut(s)	415, 542
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	3 cut(s)	22, 243, 504
HindII	GTYRAC	3 cut(s)	22, 243, 504
HinfI	GANTC	9 cut(s)	190, 380, 415, 425, 500, 505, 530, 565, 589
HpaII	CCGG	5 cut(s)	33, 234, 422, 478, 574
HphI	GGTGA	5 cut(s)	163, 223, 259, 301, 574
Hpy166II	GTNNAC	4 cut(s)	22, 243, 504, 544
Hpy188I	TCNGA	4 cut(s)	385, 510, 526, 535
Hpy188III	TCNNGA	5 cut(s)	64, 119, 187, 194, 580
Hpy8I	GTNNAC	4 cut(s)	22, 243, 504, 544
Hpy99I	CGWCG	4 cut(s)	62, 65, 247, 500
HpyCH4III	ACNGT	2 cut(s)	247, 621
HpyCH4IV	ACGT	2 cut(s)	60, 123
HpyCH4V	TGCA	2 cut(s)	157, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 605
HpyF3I	CTNAG	3 cut(s)	50, 378, 591
HpySE526I	ACGT	2 cut(s)	60, 123
Hsp92I	GRCGYC	2 cut(s)	60, 143
Hsp92II	CATG	2 cut(s)	415, 542
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	228, 249, 399
LmnI	GCTCC	2 cut(s)	373, 535
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	2 cut(s)	60, 123
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	3 cut(s)	230, 251, 401
MboI	GATC	3 cut(s)	228, 249, 399
MboII	GAAGA	2 cut(s)	79, 469
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	2 cut(s)	92, 282
MluNI	TGGCCA	1 cut(s)	625
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	7 cut(s)	389, 409, 419, 499, 509, 539, 583
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	9 cut(s)	50, 63, 100, 144, 364, 382, 504, 520, 544
Mox20I	TGGCCA	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	625
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	5 cut(s)	33, 234, 422, 478, 574
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	2 cut(s)	335, 367
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	305, 605
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	3 cut(s)	228, 249, 399
NlaIII	CATG	2 cut(s)	415, 542
NlaIV	GGNNCC	2 cut(s)	144, 375
NmuCI	GTSAC	1 cut(s)	405
NspI	RCATGY	1 cut(s)	542
NspV	TTCGAA	2 cut(s)	279, 471
PaqCI	CACCTGC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	2 cut(s)	335, 367
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	190, 565
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	142, 219
PleI	GAGTC	7 cut(s)	388, 409, 419, 499, 508, 538, 583
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	7 cut(s)	388, 409, 419, 499, 508, 538, 583
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	144, 375
PstI	CTGCAG	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	152
SalI	GTCGAC	3 cut(s)	20, 241, 502
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	141, 218
Sau3AI	GATC	3 cut(s)	228, 249, 399
SchI	GAGTC	7 cut(s)	389, 409, 419, 499, 509, 539, 583
ScrFI	CCNGG	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	144
SfuI	TTCGAA	2 cut(s)	279, 471
SgrAI	CRCCGGYG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	92, 282
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	4 cut(s)	99, 140, 237, 555
SspDI	GGCGCC	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	247, 621
TaiI	ACGT	2 cut(s)	63, 126
TaqI	TCGA	8 cut(s)	21, 242, 279, 428, 471, 503, 515, 568
TasI	AATT	2 cut(s)	92, 282
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	190, 565
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	542
XmiI	GTMKAC	3 cut(s)	21, 242, 503
XmnI	GAANNNNTTC	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.