Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021090

Physical Location & Seq

Genomic Coordinates Forward (+)

68395289 .. 68396646

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTTATTGCCGCCGCTCTCTTTTGACCGCTTCAACTTTCACTCAACTTTCCCGATGGCGCTTCGTTTCGAGGTTTTGGGGAGGTTCAATCGCGCTCGTGCAGCTCAACTGACACTCCCTCACTTTGTGTGTCAGACTCCTCTTTTCATGCCTGCTGGAGCACAAGGAACTATAAAAAGGTTGGCAACTGACCAGCTTGAGGAGATTGGTTGCCAAATAATTCTTGGGAATACATATCATTTGGCACTTCGACCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

86

Amino Acids

9.79

Weight (kDa)

9.38

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGT	PF01702	31 - 85	2.8e-17	Queuine tRNA-ribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021090)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36560
rosa_chinensis	RchiOBHm_Chr7g0242231
rosa_multiflora	Rmu_sc0000429.1_g000027
rosa_samantha	Rh1DG069500
rosa_wichuraiana	Rw0G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	16
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	11, 14, 28
AdeI	CACNNNGTG	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	34, 88
AluBI	AGCT	2 cut(s)	104, 196
AluI	AGCT	2 cut(s)	104, 196
Alw21I	GWGCWC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	61, 95
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	3 cut(s)	11, 14, 102
BlsI	GCNGC	3 cut(s)	12, 15, 103
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	129, 215
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	11, 14, 28
BspFNI	CGCG	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	16
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	61, 95
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	2 cut(s)	61, 95
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	2 cut(s)	104, 196
CviKI_1	RGCY	2 cut(s)	104, 196
DraIII	CACNNNGTG	1 cut(s)	127
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	149, 173, 235
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	11, 14, 102
Fsp4HI	GCNGC	3 cut(s)	11, 14, 102
GlaI	GCGC	2 cut(s)	60, 94
GluI	GCNGC	3 cut(s)	11, 14, 102
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	62
HhaI	GCGC	2 cut(s)	61, 95
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	59, 93
HinP1I	GCGC	2 cut(s)	59, 93
HinfI	GANTC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	59, 93
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	3 cut(s)	141, 165, 206
Lsp1109I	GCAGC	1 cut(s)	113
MbiI	CCGCTC	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	5 cut(s)	64, 75, 129, 150, 193
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	12, 15, 103
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
SatI	GCNGC	3 cut(s)	11, 14, 102
SchI	GAGTC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	6 cut(s)	75, 86, 106, 182, 198, 256
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	3 cut(s)	11, 14, 28
TaqI	TCGA	2 cut(s)	69, 250
TasI	AATT	1 cut(s)	219
TauI	GCSGC	2 cut(s)	13, 16
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.