Urb2/Npa2 family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0245541 |
| rosa_samantha | Rh6CG023400 Rh6CG024300 Rh6CG025500 Rh6DG023400 Rh6DG024800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 349 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 72 |
| Acc16I | TGCGCA | 1 cut(s) | 15 |
| Acc36I | ACCTGC | 1 cut(s) | 349 |
| AcsI | RAATTY | 3 cut(s) | 20, 158, 377 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AluBI | AGCT | 2 cut(s) | 183, 206 |
| AluI | AGCT | 2 cut(s) | 183, 206 |
| Ama87I | CYCGRG | 1 cut(s) | 114 |
| ApoI | RAATTY | 3 cut(s) | 20, 158, 377 |
| AseI | ATTAAT | 1 cut(s) | 311 |
| AspLEI | GCGC | 2 cut(s) | 16, 296 |
| AspS9I | GGNCC | 1 cut(s) | 350 |
| AvaI | CYCGRG | 1 cut(s) | 114 |
| AvaII | GGWCC | 1 cut(s) | 350 |
| BccI | CCATC | 1 cut(s) | 180 |
| BciVI | GTATCC | 1 cut(s) | 94 |
| BfaI | CTAG | 1 cut(s) | 251 |
| BfmI | CTRYAG | 1 cut(s) | 383 |
| BfoI | RGCGCY | 1 cut(s) | 297 |
| BfuAI | ACCTGC | 1 cut(s) | 349 |
| BfuI | GTATCC | 1 cut(s) | 94 |
| Bme18I | GGWCC | 1 cut(s) | 350 |
| BmeT110I | CYCGRG | 1 cut(s) | 114 |
| BmgT120I | GGNCC | 1 cut(s) | 350 |
| BmsI | GCATC | 1 cut(s) | 355 |
| Bse1I | ACTGG | 1 cut(s) | 277 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| BseGI | GGATG | 2 cut(s) | 129, 370 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseNI | ACTGG | 1 cut(s) | 277 |
| BsiHKCI | CYCGRG | 1 cut(s) | 114 |
| BsmI | GAATGC | 1 cut(s) | 173 |
| BsoBI | CYCGRG | 1 cut(s) | 114 |
| BspMI | ACCTGC | 1 cut(s) | 349 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 277 |
| Bst4CI | ACNGT | 2 cut(s) | 191, 281 |
| BstC8I | GCNNGC | 1 cut(s) | 185 |
| BstDEI | CTNAG | 1 cut(s) | 176 |
| BstF5I | GGATG | 2 cut(s) | 129, 370 |
| BstH2I | RGCGCY | 1 cut(s) | 297 |
| BstHHI | GCGC | 2 cut(s) | 16, 296 |
| BstSFI | CTRYAG | 1 cut(s) | 383 |
| BsuI | GTATCC | 1 cut(s) | 94 |
| BtsCI | GGATG | 2 cut(s) | 129, 370 |
| BtsIMutI | CAGTG | 1 cut(s) | 83 |
| BveI | ACCTGC | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 1 cut(s) | 185 |
| CfoI | GCGC | 2 cut(s) | 16, 296 |
| Cfr13I | GGNCC | 1 cut(s) | 350 |
| CviAII | CATG | 2 cut(s) | 17, 334 |
| CviJI | RGCY | 3 cut(s) | 146, 183, 206 |
| CviKI_1 | RGCY | 3 cut(s) | 146, 183, 206 |
| DdeI | CTNAG | 1 cut(s) | 176 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 72 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 350 |
| Eco88I | CYCGRG | 1 cut(s) | 114 |
| EcoRI | GAATTC | 1 cut(s) | 20 |
| FaeI | CATG | 2 cut(s) | 20, 337 |
| FaiI | YATR | 8 cut(s) | 18, 39, 56, 238, 240, 302, 335, 385 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 195, 227 |
| FatI | CATG | 2 cut(s) | 16, 333 |
| FokI | GGATG | 2 cut(s) | 136, 377 |
| FspBI | CTAG | 1 cut(s) | 251 |
| FspI | TGCGCA | 1 cut(s) | 15 |
| GlaI | GCGC | 2 cut(s) | 15, 295 |
| HaeII | RGCGCY | 1 cut(s) | 297 |
| HhaI | GCGC | 2 cut(s) | 16, 296 |
| Hin1II | CATG | 2 cut(s) | 20, 337 |
| Hin6I | GCGC | 2 cut(s) | 14, 294 |
| HinP1I | GCGC | 2 cut(s) | 14, 294 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HinfI | GANTC | 2 cut(s) | 110, 254 |
| HpaI | GTTAAC | 1 cut(s) | 93 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 373 |
| Hpy188I | TCNGA | 3 cut(s) | 109, 166, 232 |
| Hpy188III | TCNNGA | 2 cut(s) | 116, 200 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 373 |
| HpyAV | CCTTC | 2 cut(s) | 56, 296 |
| HpyCH4III | ACNGT | 2 cut(s) | 191, 281 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 187, 242, 333 |
| HpyF3I | CTNAG | 1 cut(s) | 176 |
| Hsp92II | CATG | 2 cut(s) | 20, 337 |
| HspAI | GCGC | 2 cut(s) | 14, 294 |
| KspAI | GTTAAC | 1 cut(s) | 93 |
| LpnPI | CCDG | 5 cut(s) | 72, 185, 258, 329, 344 |
| LweI | GCATC | 1 cut(s) | 355 |
| MaeI | CTAG | 1 cut(s) | 251 |
| MaeIII | GTNAC | 2 cut(s) | 265, 281 |
| MluCI | AATT | 6 cut(s) | 20, 27, 158, 308, 312, 377 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| MnlI | CCTC | 2 cut(s) | 136, 215 |
| MseI | TTAA | 3 cut(s) | 92, 195, 311 |
| Mva1269I | GAATGC | 1 cut(s) | 173 |
| NlaIII | CATG | 2 cut(s) | 20, 337 |
| NmeAIII | GCCGAG | 1 cut(s) | 270 |
| NmuCI | GTSAC | 1 cut(s) | 265 |
| NsbI | TGCGCA | 1 cut(s) | 15 |
| PaqCI | CACCTGC | 1 cut(s) | 349 |
| PctI | GAATGC | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PleI | GAGTC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 262 |
| PshBI | ATTAAT | 1 cut(s) | 311 |
| PspPI | GGNCC | 1 cut(s) | 350 |
| SaqAI | TTAA | 3 cut(s) | 92, 195, 311 |
| Sau96I | GGNCC | 1 cut(s) | 350 |
| SchI | GAGTC | 1 cut(s) | 263 |
| SetI | ASST | 4 cut(s) | 185, 208, 288, 363 |
| SfaNI | GCATC | 1 cut(s) | 355 |
| SfcI | CTRYAG | 1 cut(s) | 383 |
| SinI | GGWCC | 1 cut(s) | 350 |
| Sse9I | AATT | 6 cut(s) | 20, 27, 158, 308, 312, 377 |
| SspMI | CTAG | 1 cut(s) | 251 |
| TaaI | ACNGT | 2 cut(s) | 191, 281 |
| TasI | AATT | 6 cut(s) | 20, 27, 158, 308, 312, 377 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| Tru1I | TTAA | 3 cut(s) | 92, 195, 311 |
| Tru9I | TTAA | 3 cut(s) | 92, 195, 311 |
| TscAI | CASTG | 1 cut(s) | 83 |
| TseFI | GTSAC | 1 cut(s) | 265 |
| Tsp45I | GTSAC | 1 cut(s) | 265 |
| TspDTI | ATGAA | 4 cut(s) | 33, 62, 140, 165 |
| TspRI | CASTG | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 1 cut(s) | 350 |
| VspI | ATTAAT | 1 cut(s) | 311 |
| XapI | RAATTY | 3 cut(s) | 20, 158, 377 |
| XspI | CTAG | 1 cut(s) | 251 |