Rh6CG024300

Urb2/Npa2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0020592
Physical Location & Seq
Reverse (-)
2221683 .. 2222351
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG024300.1

Sequence Viewer

Length: 669 bp
ATGAAGTCCATACCAGAAGGACAAGCAAGTCAGTGTATTTGGCAGTTAACATTGTATATATCAGAATCTCTGGAGTGGATGAAAGTTAGTTGTTCAGAGGCAGATGAAAAAGAATTTTCTGAATGCCATCTAAGTAGCTTGCACAGTTTTAATCTGGAAGCTGAACTTTTCGGGAGAGGGTTGTCAGAAATATATGCATTATTCCTAGAGTCATTGCTTGTCACAACTGGAAACTGTAACCTTCTTGGCGCTTCTATAAGGGAATTAATTAGAGTGATTTTCCCTTGCATGAGCAATCTGGTTGGACCACAGCAGGAGGATGCTGTAAACAAATTCCTACGGTCTGTCGCGGTAAAAGATTCTGACAATGTGATCGCTAGAAACAAAAACGAATATCTGATATTTGGAGTCTCCACTTATTGGGTAGTTTTGTTCCTCTTTCGGTTGTATAGCTCCTGCCGATGCTTATATAGGCAAGCTGCAATCCTTATGCCTCCAGATTTGTCAAGAAAGATGTCTGCAGAAATGGGAGATTCGTTCTCCTCATTCTCTGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGAATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTTCTTTCTGTTATTCAATCTGTTTCAAACATCTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Urb2

Protein Analysis

222

Amino Acids

25.27

Weight (kDa)

5.02

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020592)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0245541
rosa_samantha Rh6CG023400 Rh6CG024300 Rh6CG025500 Rh6DG023400 Rh6DG024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 27
AccB7I CCANNNNNTGG 1 cut(s) 420
AccII CGCG 1 cut(s) 350
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 3 cut(s) 113, 332, 594
AcuI CTGAAG 1 cut(s) 604
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 2 cut(s) 645, 655
AluBI AGCT 5 cut(s) 138, 161, 453, 479, 624
AluI AGCT 5 cut(s) 138, 161, 453, 479, 624
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 1 cut(s) 590
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 3 cut(s) 113, 332, 594
AseI ATTAAT 1 cut(s) 266
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 466
BccI CCATC 2 cut(s) 135, 559
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 2 cut(s) 206, 378
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 252
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmsI GCATC 2 cut(s) 310, 452
BpmI CTGGAG 2 cut(s) 92, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 212
BseGI GGATG 3 cut(s) 84, 325, 570
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 532
BseXI GCAGC 1 cut(s) 466
Bsh1236I CGCG 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 611
Bsp143I GATC 2 cut(s) 372, 582
BspACI CCGC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 611
BsrI ACTGG 1 cut(s) 232
BssMI GATC 2 cut(s) 372, 582
Bst4CI ACNGT 3 cut(s) 146, 236, 342
Bst6I CTCTTC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 140, 477
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 84, 325, 570
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 2 cut(s) 375, 585
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 2 cut(s) 372, 582
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 466
BtsCI GGATG 3 cut(s) 84, 325, 570
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 140, 477
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 612
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 138, 161, 453, 479, 624
CviKI_1 RGCY 5 cut(s) 138, 161, 453, 479, 624
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 374, 584
DpnII GATC 2 cut(s) 372, 582
DrdI GACNNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 199
FaeI CATG 1 cut(s) 292
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 3 cut(s) 91, 332, 577
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 2 cut(s) 206, 378
GlaI GCGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 480
GsuI CTGGAG 2 cut(s) 92, 480
HaeII RGCGCY 1 cut(s) 252
HhaI GCGC 1 cut(s) 251
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 5 cut(s) 65, 209, 359, 408, 533
HpaI GTTAAC 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 48, 328
Hpy188I TCNGA 7 cut(s) 64, 97, 121, 187, 364, 399, 577
Hpy188III TCNNGA 5 cut(s) 71, 155, 172, 497, 507
Hpy8I GTNNAC 2 cut(s) 48, 328
HpyAV CCTTC 3 cut(s) 11, 251, 628
HpyCH4III ACNGT 3 cut(s) 146, 236, 342
HpyCH4V TGCA 5 cut(s) 142, 197, 288, 482, 521
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 249
KspAI GTTAAC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 372, 582
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 2 cut(s) 310, 452
MaeI CTAG 2 cut(s) 206, 378
MaeIII GTNAC 2 cut(s) 220, 236
MalI GATC 2 cut(s) 374, 584
MboI GATC 2 cut(s) 372, 582
MboII GAAGA 1 cut(s) 621
MluCI AATT 5 cut(s) 113, 263, 267, 332, 594
MlyI GAGTC 2 cut(s) 218, 417
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 6 cut(s) 91, 170, 310, 446, 504, 553
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 3 cut(s) 47, 150, 266
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 1 cut(s) 350
NdeII GATC 2 cut(s) 372, 582
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 199
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 3 cut(s) 65, 359, 533
PflMI CCANNNNNTGG 1 cut(s) 420
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 2 cut(s) 217, 416
PpsI GAGTC 2 cut(s) 217, 416
PshBI ATTAAT 1 cut(s) 266
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 523
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
SaqAI TTAA 3 cut(s) 47, 150, 266
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 2 cut(s) 372, 582
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 2 cut(s) 218, 417
SetI ASST 7 cut(s) 140, 163, 243, 455, 481, 620, 626
SfaNI GCATC 2 cut(s) 310, 452
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 305
Sse9I AATT 5 cut(s) 113, 263, 267, 332, 594
SsiI CCGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 206, 378
TaaI ACNGT 3 cut(s) 146, 236, 342
TasI AATT 5 cut(s) 113, 263, 267, 332, 594
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 3 cut(s) 65, 359, 533
Tru1I TTAA 3 cut(s) 47, 150, 266
Tru9I TTAA 3 cut(s) 47, 150, 266
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 17, 95, 120
TspRI CASTG 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 305
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 3 cut(s) 113, 332, 594
XspI CTAG 2 cut(s) 206, 378
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.