Urb2/Npa2 family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0245541 |
| rosa_samantha | Rh6CG023400 Rh6CG024300 Rh6CG025500 Rh6DG023400 Rh6DG024800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 72 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 465 |
| AccII | CGCG | 1 cut(s) | 395 |
| AciI | CCGC | 2 cut(s) | 206, 395 |
| AcsI | RAATTY | 2 cut(s) | 158, 377 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 465 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AluBI | AGCT | 1 cut(s) | 358 |
| AluI | AGCT | 1 cut(s) | 358 |
| Alw26I | GTCTC | 1 cut(s) | 460 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| ApoI | RAATTY | 2 cut(s) | 158, 377 |
| AseI | ATTAAT | 1 cut(s) | 311 |
| BbvI | GCAGC | 1 cut(s) | 536 |
| BccI | CCATC | 1 cut(s) | 180 |
| BcoDI | GTCTC | 1 cut(s) | 460 |
| BfaI | CTAG | 3 cut(s) | 116, 251, 423 |
| BfmI | CTRYAG | 1 cut(s) | 353 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| BmsI | GCATC | 2 cut(s) | 355, 497 |
| BpmI | CTGGAG | 1 cut(s) | 380 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 465 |
| Bse1I | ACTGG | 1 cut(s) | 277 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| BseGI | GGATG | 2 cut(s) | 129, 370 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 465 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseNI | ACTGG | 1 cut(s) | 277 |
| BseXI | GCAGC | 1 cut(s) | 536 |
| Bsh1236I | CGCG | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 465 |
| BsmAI | GTCTC | 1 cut(s) | 460 |
| BsmI | GAATGC | 1 cut(s) | 173 |
| Bsp143I | GATC | 1 cut(s) | 417 |
| BspACI | CCGC | 2 cut(s) | 206, 395 |
| BspFNI | CGCG | 1 cut(s) | 395 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 277 |
| BssMI | GATC | 1 cut(s) | 417 |
| Bst4CI | ACNGT | 2 cut(s) | 191, 281 |
| BstC8I | GCNNGC | 2 cut(s) | 185, 522 |
| BstDEI | CTNAG | 1 cut(s) | 176 |
| BstF5I | GGATG | 2 cut(s) | 129, 370 |
| BstFNI | CGCG | 1 cut(s) | 395 |
| BstKTI | GATC | 1 cut(s) | 420 |
| BstMAI | GTCTC | 1 cut(s) | 460 |
| BstMBI | GATC | 1 cut(s) | 417 |
| BstSFI | CTRYAG | 1 cut(s) | 353 |
| BstUI | CGCG | 1 cut(s) | 395 |
| BstV1I | GCAGC | 1 cut(s) | 536 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 179 |
| BtsCI | GGATG | 2 cut(s) | 129, 370 |
| Cac8I | GCNNGC | 2 cut(s) | 185, 522 |
| CviAII | CATG | 2 cut(s) | 17, 334 |
| CviJI | RGCY | 3 cut(s) | 146, 183, 358 |
| CviKI_1 | RGCY | 3 cut(s) | 146, 183, 358 |
| DdeI | CTNAG | 1 cut(s) | 176 |
| DpnI | GATC | 1 cut(s) | 419 |
| DpnII | GATC | 1 cut(s) | 417 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 72 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 72 |
| FaeI | CATG | 2 cut(s) | 20, 337 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 195, 227 |
| FatI | CATG | 2 cut(s) | 16, 333 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FokI | GGATG | 2 cut(s) | 136, 377 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 3 cut(s) | 116, 251, 423 |
| GluI | GCNGC | 1 cut(s) | 525 |
| GsuI | CTGGAG | 1 cut(s) | 380 |
| Hin1II | CATG | 2 cut(s) | 20, 337 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HinfI | GANTC | 3 cut(s) | 110, 254, 453 |
| HpaI | GTTAAC | 1 cut(s) | 93 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 373 |
| Hpy188I | TCNGA | 7 cut(s) | 109, 142, 166, 232, 409, 417, 444 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 200, 217 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 373 |
| HpyAV | CCTTC | 2 cut(s) | 56, 296 |
| HpyCH4III | ACNGT | 2 cut(s) | 191, 281 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 32, 187, 242, 333 |
| HpyF3I | CTNAG | 1 cut(s) | 176 |
| Hsp92II | CATG | 2 cut(s) | 20, 337 |
| KspAI | GTTAAC | 1 cut(s) | 93 |
| Kzo9I | GATC | 1 cut(s) | 417 |
| LpnPI | CCDG | 6 cut(s) | 72, 185, 258, 329, 344, 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 536 |
| LweI | GCATC | 2 cut(s) | 355, 497 |
| MaeI | CTAG | 3 cut(s) | 116, 251, 423 |
| MaeIII | GTNAC | 2 cut(s) | 265, 281 |
| MalI | GATC | 1 cut(s) | 419 |
| MboI | GATC | 1 cut(s) | 417 |
| MboII | GAAGA | 1 cut(s) | 61 |
| MluCI | AATT | 5 cut(s) | 27, 158, 308, 312, 377 |
| MlyI | GAGTC | 2 cut(s) | 263, 462 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| MnlI | CCTC | 3 cut(s) | 136, 215, 355 |
| MseI | TTAA | 4 cut(s) | 92, 195, 311, 541 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspA1I | CMGCKG | 1 cut(s) | 358 |
| Mva1269I | GAATGC | 1 cut(s) | 173 |
| MvnI | CGCG | 1 cut(s) | 395 |
| NdeII | GATC | 1 cut(s) | 417 |
| NlaIII | CATG | 2 cut(s) | 20, 337 |
| NmuCI | GTSAC | 1 cut(s) | 265 |
| PctI | GAATGC | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 465 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PleI | GAGTC | 2 cut(s) | 262, 461 |
| PpsI | GAGTC | 2 cut(s) | 262, 461 |
| PshBI | ATTAAT | 1 cut(s) | 311 |
| PvuII | CAGCTG | 1 cut(s) | 358 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SaqAI | TTAA | 4 cut(s) | 92, 195, 311, 541 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 1 cut(s) | 417 |
| SchI | GAGTC | 2 cut(s) | 263, 462 |
| SetI | ASST | 3 cut(s) | 288, 360, 406 |
| SfaNI | GCATC | 2 cut(s) | 355, 497 |
| SfcI | CTRYAG | 1 cut(s) | 353 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| Sse9I | AATT | 5 cut(s) | 27, 158, 308, 312, 377 |
| SsiI | CCGC | 2 cut(s) | 206, 395 |
| SspMI | CTAG | 3 cut(s) | 116, 251, 423 |
| TaaI | ACNGT | 2 cut(s) | 191, 281 |
| TaqI | TCGA | 1 cut(s) | 487 |
| TasI | AATT | 5 cut(s) | 27, 158, 308, 312, 377 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| Tru1I | TTAA | 4 cut(s) | 92, 195, 311, 541 |
| Tru9I | TTAA | 4 cut(s) | 92, 195, 311, 541 |
| TseFI | GTSAC | 1 cut(s) | 265 |
| TseI | GCWGC | 1 cut(s) | 524 |
| Tsp45I | GTSAC | 1 cut(s) | 265 |
| TspDTI | ATGAA | 3 cut(s) | 62, 140, 165 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 465 |
| VspI | ATTAAT | 1 cut(s) | 311 |
| XapI | RAATTY | 2 cut(s) | 158, 377 |
| XbaI | TCTAGA | 1 cut(s) | 115 |
| XspI | CTAG | 3 cut(s) | 116, 251, 423 |