Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020289

Physical Location & Seq

Genomic Coordinates Reverse (-)

15106490 .. 15106789

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACCAGGGGATCAGCAGAGAAGAAAGGGGTATCAAAGTTAAACAGGAATGACATTGTGATGTTAAATATTGGATCCAAGGCCACAGAAGCAAAGGTTGTTGCTGTGAGGGATAGTAGGGTGAAGTTGCGACTCATCACCTCTCCAGTTTGCACTAACATAGGTGACAAAGTGGCGATCATTCAAAGAGTCGAGCAGCATAAGCCCCGGTGTCATATCGCTTGGGGCGAGATTACAGATGGGAGAACTCTTCATATCGAACCTTGCCCTACTTTAGAAGCTGACTCCACAAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

9.45

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF2_C	PF09173	4 - 67	6.1e-15	Initiation factor eIF2 gamma, C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07310
rosa_chinensis	RchiOBHm_Chr6g0259911
rosa_multiflora	Rmu_sc0009049.1_g000015
rosa_samantha	Rh6BG103600 Rh6CG096900 Rh6DG090600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	19, 69, 82
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
AlwI	GGATC	3 cut(s)	19, 69, 82
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	130, 133, 176
BamHI	GGATCC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	7, 208
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	7, 208
BpmI	CTGGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	208
BsaJI	CCNNGG	3 cut(s)	6, 78, 206
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	6, 78, 206
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	208
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	11, 74, 177
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	19, 69, 82
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	6, 78, 206
BssMI	GATC	3 cut(s)	11, 74, 177
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	255
BstKTI	GATC	3 cut(s)	14, 77, 180
BstMBI	GATC	3 cut(s)	11, 74, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 202
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 206
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	83
CviJI	RGCY	3 cut(s)	83, 205, 281
CviKI_1	RGCY	3 cut(s)	83, 205, 281
DpnI	GATC	3 cut(s)	13, 76, 179
DpnII	GATC	3 cut(s)	11, 74, 177
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaiI	YATR	4 cut(s)	161, 201, 216, 255
Fnu4HI	GCNGC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	208
HinfI	GANTC	3 cut(s)	132, 189, 284
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	3 cut(s)	130, 133, 176
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 202
Kzo9I	GATC	3 cut(s)	11, 74, 177
LpnPI	CCDG	4 cut(s)	19, 31, 159, 221
Lsp1109I	GCAGC	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	13, 76, 179
MboI	GATC	3 cut(s)	11, 74, 177
MboII	GAAGA	2 cut(s)	34, 242
MflI	RGATCY	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	126, 198, 278
MnlI	CCTC	2 cut(s)	102, 151
MseI	TTAA	2 cut(s)	41, 65
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	7, 208
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	89, 202
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	3 cut(s)	11, 74, 177
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	3 cut(s)	126, 197, 278
PpsI	GAGTC	3 cut(s)	126, 197, 278
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	41, 65
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	3 cut(s)	11, 74, 177
SchI	GAGTC	3 cut(s)	126, 198, 278
ScrFI	CCNGG	2 cut(s)	7, 208
SetI	ASST	5 cut(s)	99, 143, 166, 265, 283
SmiMI	CAYNNNNRTG	1 cut(s)	59
SspI	AATATT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	5, 206
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	2 cut(s)	192, 258
Tru1I	TTAA	2 cut(s)	41, 65
Tru9I	TTAA	2 cut(s)	41, 65
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.