Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025078

Physical Location & Seq

Genomic Coordinates Forward (+)

37478921 .. 37485343

Gene Structure 6423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGCGATTACTCAAGTTTTCAGGGGTGAAAGTTCATCTGAGGAATCACATAGGTGCCTGGAGTAAAAAGTACCGAAAGAAACCAGGAGAATTGGATGAGCGAGTGTTTAAGAATCAGAGACTGCAGGACTTGCTCAGAAGATCAGGTCAGACATTCCAAGCAGACCGTGAATTCAAGAAAGCAGCTGAAGCCCTTTTCTGGCAGGCAACATGTGGATTCCAATGTCTCTTTATCAAGGCATGGCCCTTGGTCTCTGAATTCTGTTATCAAGAATTTGAGAACATCTATAGAAGGATTGGAGTTACCATTCTCGATGGACAGGAAGATCGCGTCCACTTGTATTTTCATGCTGCTATACAGACCTTGAAGAGTTTTGGATTGATTTCAGAAAGGAAGGACGATCAGCATATATTCTTGATTGACAAGAATGGTCGTTTGGGCGATGACATTACTAATTTTATGATCGAAGGTTTTAACCATATCCTAACTGATCTCACAGCTCTCTGGTATCGGCTCAAGGTTGAGAAAGCCGAGTGGATCATATACATTACTATTGAGCAGAAGCAGCAGAAGAGCAATGTTATGAAGTTAGCTGGAACTGCTGGTTGGCTCCCAACGGAGTGTGGCTCGTTCAAGACATTGCCTAAAGCTAGCCATATTGGTGTTGGTCTTGTTCCTGGATCAGATACTGTCAAAGCTTTTAAATTGTTTGATCTACTTGATGAAGCTAAGAGCGCAGCCCGAAGACACCTTATGAAGTGTGGTGATGGCCGGGGTAACAAGTGGGATGAAGATTCTCTTGAAAAATTGGCAGAAACTATTGGTTGTGCTGCTGCCAAGTATGTTTACTTGCAGGATGATAGACGTGGCAATGATAAGTCTGATTTTGTTCGGATGCTAAATGACAGGGAAATCAATGTTTACTTTCTCGATCATGGTTCTTTCTGTTATACATGGAGGCATTATAAAGAAGTGGAGAACGACGATATTGTGTTGGATGAAGATCTGGAATGTGAACTGGGGTCACATTTGCTGAAATTTGCTGAGACAGTGATGACAGCATGCAAATCTGTCAAACCGAGTCTATTGTGTGGTTATTTATCCCGGCTGATACAAATCTTTAAGACGTTTTCAGATGATTTCAAGGCTCGGAAGGTCTTCATCTTTAGGAATCTGGAGTTATGGAGGAGAAAAACATTGCTTTGTGAGGCAGCATCTTCTATAATGCGCCGGTGTTTTGATCTACTCGGAGTCCCTGATCCATTACTGTTATGTAGTGAAGAATCTGATAAATCTGCTGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

435

Amino Acids

50.31

Weight (kDa)

8.54

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	2 - 291	1.8e-17	tRNA synthetases class I (R), catalytic domain
DALR_1	PF05746	324 - 419	2.9e-10	DALR anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025078)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275621
rosa_samantha	Rh6CG212000 Rh6DG202600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	3 cut(s)	545, 688, 1253
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	4 cut(s)	170, 257, 272, 1037
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	175, 367, 634, 803, 1144
AjiI	CACGTC	1 cut(s)	866
AjnI	CCWGG	3 cut(s)	56, 82, 676
AjuI	GAANNNNNNNTTGG	4 cut(s)	419, 451, 589, 621
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	6 cut(s)	185, 500, 593, 650, 698, 728
AluI	AGCT	6 cut(s)	185, 500, 593, 650, 698, 728
Alw26I	GTCTC	4 cut(s)	112, 230, 256, 1040
AlwI	GGATC	3 cut(s)	545, 688, 1253
AlwNI	CAGNNNCTG	2 cut(s)	121, 689
AoxI	GGCC	2 cut(s)	242, 769
ApeKI	GCWGC	7 cut(s)	182, 350, 565, 737, 830, 833, 1211
ApoI	RAATTY	4 cut(s)	170, 257, 272, 1037
Asp700I	GAANNNNTTC	1 cut(s)	1157
AspLEI	GCGC	2 cut(s)	737, 1230
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	2 cut(s)	773, 1105
AsuHPI	GGTGA	2 cut(s)	37, 776
AsuNHI	GCTAGC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	751, 1150
BbvI	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
BccI	CCATC	2 cut(s)	308, 761
BciT130I	CCWGG	3 cut(s)	58, 84, 678
BcnI	CCSGG	2 cut(s)	773, 1105
BcoDI	GTCTC	4 cut(s)	112, 230, 256, 1040
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	2 cut(s)	122, 286
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
BlsI	GCNGC	7 cut(s)	184, 352, 567, 739, 832, 835, 1213
Bme1390I	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
BmgBI	CACGTC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	55, 611
BmrFI	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
BmrI	ACTGGG	1 cut(s)	1028
BmsI	GCATC	2 cut(s)	885, 1223
BmtI	GCTAGC	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	1028
BpiI	GAAGAC	2 cut(s)	751, 1150
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	2 cut(s)	79, 1196
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	773, 1105
BsaBI	GATNNNNATC	2 cut(s)	1002, 1115
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	246, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	1230
Bse1I	ACTGG	1 cut(s)	1023
Bse3DI	GCAATG	4 cut(s)	583, 638, 877, 1196
Bse8I	GATNNNNATC	2 cut(s)	1002, 1115
BseBI	CCWGG	3 cut(s)	58, 84, 678
BseDI	CCNNGG	2 cut(s)	246, 772
BseGI	GGATG	5 cut(s)	100, 793, 862, 900, 1003
BseJI	GATNNNNATC	2 cut(s)	1002, 1115
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	4 cut(s)	583, 638, 877, 1196
BseMII	CTCAG	3 cut(s)	29, 148, 1035
BseNI	ACTGG	1 cut(s)	1023
BseRI	GAGGAG	1 cut(s)	1201
BseXI	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	244, 771
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	772, 1105, 1231
BslFI	GGGAC	1 cut(s)	1238
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	4 cut(s)	112, 230, 256, 1040
BsmFI	GGGAC	1 cut(s)	1238
BsnI	GGCC	2 cut(s)	244, 771
Bso31I	GGTCTC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	244, 771
BspCNI	CTCAG	3 cut(s)	30, 147, 1036
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	55, 611
BspMAI	CTGCAG	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	654
BspPI	GGATC	3 cut(s)	545, 688, 1253
BspQI	GCTCTTC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	4 cut(s)	583, 638, 877, 1196
BsrFI	RCCGGY	1 cut(s)	1230
BsrI	ACTGG	1 cut(s)	1023
BssAI	RCCGGY	1 cut(s)	1230
BssECI	CCNNGG	2 cut(s)	246, 772
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	58, 84, 678
Bst4CI	ACNGT	4 cut(s)	167, 691, 1051, 1269
Bst6I	CTCTTC	2 cut(s)	362, 566
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	204, 652, 1063, 1300
BstDEI	CTNAG	4 cut(s)	38, 134, 729, 1044
BstF5I	GGATG	5 cut(s)	100, 793, 862, 900, 1003
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	737, 1230
BstMAI	GTCTC	4 cut(s)	112, 230, 256, 1040
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 188, 565, 599, 734
BstNI	CCWGG	3 cut(s)	58, 84, 678
BstNSI	RCATGY	2 cut(s)	213, 1065
BstSCI	CCNGG	5 cut(s)	56, 82, 676, 771, 1103
BstSFI	CTRYAG	2 cut(s)	122, 286
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
BstV2I	GAAGAC	2 cut(s)	751, 1150
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
BsuRI	GGCC	2 cut(s)	244, 771
BtgZI	GCGATG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	866
BtsCI	GGATG	5 cut(s)	100, 793, 862, 900, 1003
BtsIMutI	CAGTG	1 cut(s)	1056
Cac8I	GCNNGC	4 cut(s)	204, 652, 1063, 1300
CaiI	CAGNNNCTG	2 cut(s)	121, 689
CfoI	GCGC	2 cut(s)	737, 1230
Cfr10I	RCCGGY	1 cut(s)	1230
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	6 cut(s)	210, 240, 347, 935, 954, 1062
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	38, 134, 729, 1044
DraI	TTTAAA	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	362, 566
EarI	CTCTTC	2 cut(s)	362, 566
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	207
EcoRI	GAATTC	2 cut(s)	170, 257
EcoRII	CCWGG	3 cut(s)	56, 82, 676
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	1 cut(s)	1238
FatI	CATG	6 cut(s)	209, 239, 346, 934, 953, 1061
Fnu4HI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
FokI	GGATG	5 cut(s)	107, 800, 869, 907, 1010
Fsp4HI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	2 cut(s)	736, 1229
GluI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
GsuI	CTGGAG	2 cut(s)	79, 1196
HaeIII	GGCC	2 cut(s)	244, 771
HapII	CCGG	3 cut(s)	772, 1105, 1231
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	737, 1230
Hin1II	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
Hin6I	GCGC	2 cut(s)	735, 1228
HinP1I	GCGC	2 cut(s)	735, 1228
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	8 cut(s)	43, 112, 216, 794, 1081, 1171, 1251, 1283
HpaII	CCGG	3 cut(s)	772, 1105, 1231
HphI	GGTGA	2 cut(s)	37, 776
Hpy166II	GTNNAC	4 cut(s)	334, 847, 922, 1016
Hpy188III	TCNNGA	9 cut(s)	175, 269, 311, 415, 634, 800, 929, 1007, 1175
Hpy8I	GTNNAC	4 cut(s)	334, 847, 922, 1016
Hpy99I	CGWCG	1 cut(s)	986
HpyAV	CCTTC	4 cut(s)	285, 388, 461, 1147
HpyCH4III	ACNGT	4 cut(s)	167, 691, 1051, 1269
HpyCH4IV	ACGT	2 cut(s)	865, 1127
HpyCH4V	TGCA	3 cut(s)	124, 853, 1065
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 188, 565, 599, 734
HpyF3I	CTNAG	4 cut(s)	38, 134, 729, 1044
HpySE526I	ACGT	2 cut(s)	865, 1127
Hsp92II	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
HspAI	GCGC	2 cut(s)	735, 1228
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
LweI	GCATC	2 cut(s)	885, 1223
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	2 cut(s)	865, 1127
MaeIII	GTNAC	3 cut(s)	301, 776, 1023
MflI	RGATCY	1 cut(s)	1003
MluCI	AATT	8 cut(s)	89, 170, 257, 272, 454, 704, 806, 1037
MlyI	GAGTC	2 cut(s)	1090, 1260
MmeI	TCCRAC	1 cut(s)	975
MnlI	CCTC	4 cut(s)	33, 951, 1179, 1201
MroXI	GAANNNNTTC	1 cut(s)	1157
MseI	TTAA	4 cut(s)	108, 474, 702, 1122
MslI	CAYNNNNRTG	2 cut(s)	51, 660
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	772, 1105, 1231
MspR9I	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
MvaI	CCWGG	3 cut(s)	58, 84, 678
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	5 cut(s)	130, 188, 565, 599, 734
NciI	CCSGG	2 cut(s)	773, 1105
NheI	GCTAGC	1 cut(s)	650
NlaIII	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
NlaIV	GGNNCC	2 cut(s)	55, 611
NmeAIII	GCCGAG	1 cut(s)	556
NmuCI	GTSAC	1 cut(s)	1023
NspI	RCATGY	2 cut(s)	213, 1065
OliI	CACNNNNGTG	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	1065
PciI	ACATGT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	1157
PfeI	GAWTC	6 cut(s)	43, 112, 216, 794, 1171, 1283
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	7 cut(s)	184, 352, 567, 739, 832, 835, 1213
PleI	GAGTC	2 cut(s)	1089, 1259
PpsI	GAGTC	2 cut(s)	1089, 1259
PscI	ACATGT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	966
Psp6I	CCWGG	3 cut(s)	56, 82, 676
PspGI	CCWGG	3 cut(s)	56, 82, 676
PspN4I	GGNNCC	2 cut(s)	55, 611
PspPI	GGNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	2 cut(s)	121, 689
PsuI	RGATCY	1 cut(s)	1003
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	51, 660
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	4 cut(s)	108, 474, 702, 1122
SatI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	1090, 1260
ScrFI	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
SfaNI	GCATC	2 cut(s)	885, 1223
SfcI	CTRYAG	2 cut(s)	122, 286
SgrAI	CRCCGGYG	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	51, 660
SmlI	CTYRAG	2 cut(s)	11, 515
SmoI	CTYRAG	2 cut(s)	11, 515
SphI	GCATGC	1 cut(s)	1065
Sse9I	AATT	8 cut(s)	89, 170, 257, 272, 454, 704, 806, 1037
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	5 cut(s)	56, 82, 676, 771, 1103
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	4 cut(s)	167, 691, 1051, 1269
TaiI	ACGT	2 cut(s)	868, 1130
TaqI	TCGA	3 cut(s)	312, 465, 930
TasI	AATT	8 cut(s)	89, 170, 257, 272, 454, 704, 806, 1037
TfiI	GAWTC	6 cut(s)	43, 112, 216, 794, 1171, 1283
Tru1I	TTAA	4 cut(s)	108, 474, 702, 1122
Tru9I	TTAA	4 cut(s)	108, 474, 702, 1122
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	7 cut(s)	182, 350, 565, 737, 830, 833, 1211
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	8 cut(s)	23, 335, 599, 738, 770, 804, 1014, 1150
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	1056
XapI	RAATTY	4 cut(s)	170, 257, 272, 1037
XceI	RCATGY	2 cut(s)	213, 1065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	1157
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.