Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025078

Physical Location & Seq

Genomic Coordinates Forward (+)

37478921 .. 37485343

Gene Structure 6423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGCGATTACTCAAGTTTTCAGGGGTGAAAGTTCATCTGAGGAATCACATAGGTGCCTGGAGTAAAAAGTACCGAAAGAAACCAGGAGAATTGGATGAGCGAGTGTTTAAGAATCAGAGACTGCAGGACTTGCTCAGAAGATCAGGTCAGACATTCCAAGCAGACCGTGAATTCAAGAAAGCAGCTGAAGCCCTTTTCTGGCAGGCAACATGTGGATTCCAATGTCTCTTTATCAAGGCATGGCCCTTGGTCTCTGAATTCTGTTATCAAGAATTTGAGAACATCTATAGAAGGATTGGAGTTACCATTCTCGATGGACAGGAAGATCGCGTCCACTTGTATTTTCATGCTGCTATACAGACCTTGAAGAGTTTTGGATTGATTTCAGAAAGGAAGGACGATCAGCATATATTCTTGATTGACAAGAATGGTCGTTTGGGCGATGACATTACTAATTTTATGATCGAAGGTTTTAACCATATCCTAACTGATCTCACAGCTCTCTGGTATCGGCTCAAGGTTGAGAAAGCCGAGTGGATCATATACATTACTATTGAGCAGAAGCAGCAGAAGAGCAATGTTATGAAGTTAGCTGGAACTGCTGGTTGGCTCCCAACGGAGTGTGGCTCGTTCAAGACATTGCCTAAAGCTAGCCATATTGGTGTTGGTCTTGTTCCTGGATCAGATACTGTCAAAGCTTTTAAATTGTTTGATCTACTTGATGAAGCTAAGAGCGCAGCCCGAAGACACCTTATGAAGTGTGGTGATGGCCGGGGTAACAAGTGGGATGAAGATTCTCTTGAAAAATTGGCAGAAACTATTGGTTGTGCTGCTGCCAAGTATGTTTACTTGCAGGATGATAGACGTGGCAATGATAAGTCTGATTTTGTTCGGATGCTAAATGACAGGGAAATCAATGTTTACTTTCTCGATCATGGTTCTTTCTGTTATACATGGAGGCATTATAAAGAAGTGGAGAACGACGATATTGTGTTGGATGAAGATCTGGAATGTGAACTGGGGTCACATTTGCTGAAATTTGCTGAGACAGTGATGACAGCATGCAAATCTGTCAAACCGAGTCTATTGTGTGGTTATTTATCCCGGCTGATACAAATCTTTAAGACGTTTTCAGATGATTTCAAGGCTCGGAAGGTCTTCATCTTTAGGAATCTGGAGTTATGGAGGAGAAAAACATTGCTTTGTGAGGCAGCATCTTCTATAATGCGCCGGTGTTTTGATCTACTCGGAGTCCCTGATCCATTACTGTTATGTAGTGAAGAATCTGATAAATCTGCTGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

435

Amino Acids

50.31

Weight (kDa)

8.54

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	2 - 291	1.8e-17	tRNA synthetases class I (R), catalytic domain
DALR_1	PF05746	324 - 419	2.9e-10	DALR anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025078)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275621
rosa_samantha	Rh6CG212000 Rh6DG202600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	3 cut(s)	545, 688, 1253
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	4 cut(s)	170, 257, 272, 1037
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	175, 367, 634, 803, 1144
AjiI	CACGTC	1 cut(s)	866
AjnI	CCWGG	3 cut(s)	56, 82, 676
AjuI	GAANNNNNNNTTGG	4 cut(s)	419, 451, 589, 621
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	6 cut(s)	185, 500, 593, 650, 698, 728
AluI	AGCT	6 cut(s)	185, 500, 593, 650, 698, 728
Alw26I	GTCTC	4 cut(s)	112, 230, 256, 1040
AlwI	GGATC	3 cut(s)	545, 688, 1253
AlwNI	CAGNNNCTG	2 cut(s)	121, 689
AoxI	GGCC	2 cut(s)	242, 769
ApeKI	GCWGC	7 cut(s)	182, 350, 565, 737, 830, 833, 1211
ApoI	RAATTY	4 cut(s)	170, 257, 272, 1037
Asp700I	GAANNNNTTC	1 cut(s)	1157
AspLEI	GCGC	2 cut(s)	737, 1230
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	2 cut(s)	773, 1105
AsuHPI	GGTGA	2 cut(s)	37, 776
AsuNHI	GCTAGC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	751, 1150
BbvI	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
BccI	CCATC	2 cut(s)	308, 761
BciT130I	CCWGG	3 cut(s)	58, 84, 678
BcnI	CCSGG	2 cut(s)	773, 1105
BcoDI	GTCTC	4 cut(s)	112, 230, 256, 1040
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	2 cut(s)	122, 286
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
BlsI	GCNGC	7 cut(s)	184, 352, 567, 739, 832, 835, 1213
Bme1390I	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
BmgBI	CACGTC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	55, 611
BmrFI	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
BmrI	ACTGGG	1 cut(s)	1028
BmsI	GCATC	2 cut(s)	885, 1223
BmtI	GCTAGC	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	1028
BpiI	GAAGAC	2 cut(s)	751, 1150
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	2 cut(s)	79, 1196
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	773, 1105
BsaBI	GATNNNNATC	2 cut(s)	1002, 1115
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	246, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	1230
Bse1I	ACTGG	1 cut(s)	1023
Bse3DI	GCAATG	4 cut(s)	583, 638, 877, 1196
Bse8I	GATNNNNATC	2 cut(s)	1002, 1115
BseBI	CCWGG	3 cut(s)	58, 84, 678
BseDI	CCNNGG	2 cut(s)	246, 772
BseGI	GGATG	5 cut(s)	100, 793, 862, 900, 1003
BseJI	GATNNNNATC	2 cut(s)	1002, 1115
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	4 cut(s)	583, 638, 877, 1196
BseMII	CTCAG	3 cut(s)	29, 148, 1035
BseNI	ACTGG	1 cut(s)	1023
BseRI	GAGGAG	1 cut(s)	1201
BseXI	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	244, 771
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	772, 1105, 1231
BslFI	GGGAC	1 cut(s)	1238
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	4 cut(s)	112, 230, 256, 1040
BsmFI	GGGAC	1 cut(s)	1238
BsnI	GGCC	2 cut(s)	244, 771
Bso31I	GGTCTC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	244, 771
BspCNI	CTCAG	3 cut(s)	30, 147, 1036
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	55, 611
BspMAI	CTGCAG	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	654
BspPI	GGATC	3 cut(s)	545, 688, 1253
BspQI	GCTCTTC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	4 cut(s)	583, 638, 877, 1196
BsrFI	RCCGGY	1 cut(s)	1230
BsrI	ACTGG	1 cut(s)	1023
BssAI	RCCGGY	1 cut(s)	1230
BssECI	CCNNGG	2 cut(s)	246, 772
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	58, 84, 678
Bst4CI	ACNGT	4 cut(s)	167, 691, 1051, 1269
Bst6I	CTCTTC	2 cut(s)	362, 566
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	204, 652, 1063, 1300
BstDEI	CTNAG	4 cut(s)	38, 134, 729, 1044
BstF5I	GGATG	5 cut(s)	100, 793, 862, 900, 1003
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	737, 1230
BstMAI	GTCTC	4 cut(s)	112, 230, 256, 1040
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 188, 565, 599, 734
BstNI	CCWGG	3 cut(s)	58, 84, 678
BstNSI	RCATGY	2 cut(s)	213, 1065
BstSCI	CCNGG	5 cut(s)	56, 82, 676, 771, 1103
BstSFI	CTRYAG	2 cut(s)	122, 286
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
BstV2I	GAAGAC	2 cut(s)	751, 1150
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
BsuRI	GGCC	2 cut(s)	244, 771
BtgZI	GCGATG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	866
BtsCI	GGATG	5 cut(s)	100, 793, 862, 900, 1003
BtsIMutI	CAGTG	1 cut(s)	1056
Cac8I	GCNNGC	4 cut(s)	204, 652, 1063, 1300
CaiI	CAGNNNCTG	2 cut(s)	121, 689
CfoI	GCGC	2 cut(s)	737, 1230
Cfr10I	RCCGGY	1 cut(s)	1230
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	6 cut(s)	210, 240, 347, 935, 954, 1062
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	38, 134, 729, 1044
DraI	TTTAAA	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	362, 566
EarI	CTCTTC	2 cut(s)	362, 566
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	207
EcoRI	GAATTC	2 cut(s)	170, 257
EcoRII	CCWGG	3 cut(s)	56, 82, 676
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	1 cut(s)	1238
FatI	CATG	6 cut(s)	209, 239, 346, 934, 953, 1061
Fnu4HI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
FokI	GGATG	5 cut(s)	107, 800, 869, 907, 1010
Fsp4HI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	2 cut(s)	736, 1229
GluI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
GsuI	CTGGAG	2 cut(s)	79, 1196
HaeIII	GGCC	2 cut(s)	244, 771
HapII	CCGG	3 cut(s)	772, 1105, 1231
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	737, 1230
Hin1II	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
Hin6I	GCGC	2 cut(s)	735, 1228
HinP1I	GCGC	2 cut(s)	735, 1228
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	8 cut(s)	43, 112, 216, 794, 1081, 1171, 1251, 1283
HpaII	CCGG	3 cut(s)	772, 1105, 1231
HphI	GGTGA	2 cut(s)	37, 776
Hpy166II	GTNNAC	4 cut(s)	334, 847, 922, 1016
Hpy188III	TCNNGA	9 cut(s)	175, 269, 311, 415, 634, 800, 929, 1007, 1175
Hpy8I	GTNNAC	4 cut(s)	334, 847, 922, 1016
Hpy99I	CGWCG	1 cut(s)	986
HpyAV	CCTTC	4 cut(s)	285, 388, 461, 1147
HpyCH4III	ACNGT	4 cut(s)	167, 691, 1051, 1269
HpyCH4IV	ACGT	2 cut(s)	865, 1127
HpyCH4V	TGCA	3 cut(s)	124, 853, 1065
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 188, 565, 599, 734
HpyF3I	CTNAG	4 cut(s)	38, 134, 729, 1044
HpySE526I	ACGT	2 cut(s)	865, 1127
Hsp92II	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
HspAI	GCGC	2 cut(s)	735, 1228
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	7 cut(s)	194, 337, 577, 749, 817, 820, 1223
LweI	GCATC	2 cut(s)	885, 1223
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	2 cut(s)	865, 1127
MaeIII	GTNAC	3 cut(s)	301, 776, 1023
MflI	RGATCY	1 cut(s)	1003
MluCI	AATT	8 cut(s)	89, 170, 257, 272, 454, 704, 806, 1037
MlyI	GAGTC	2 cut(s)	1090, 1260
MmeI	TCCRAC	1 cut(s)	975
MnlI	CCTC	4 cut(s)	33, 951, 1179, 1201
MroXI	GAANNNNTTC	1 cut(s)	1157
MseI	TTAA	4 cut(s)	108, 474, 702, 1122
MslI	CAYNNNNRTG	2 cut(s)	51, 660
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	772, 1105, 1231
MspR9I	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
MvaI	CCWGG	3 cut(s)	58, 84, 678
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	5 cut(s)	130, 188, 565, 599, 734
NciI	CCSGG	2 cut(s)	773, 1105
NheI	GCTAGC	1 cut(s)	650
NlaIII	CATG	6 cut(s)	213, 243, 350, 938, 957, 1065
NlaIV	GGNNCC	2 cut(s)	55, 611
NmeAIII	GCCGAG	1 cut(s)	556
NmuCI	GTSAC	1 cut(s)	1023
NspI	RCATGY	2 cut(s)	213, 1065
OliI	CACNNNNGTG	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	1065
PciI	ACATGT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	1157
PfeI	GAWTC	6 cut(s)	43, 112, 216, 794, 1171, 1283
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	7 cut(s)	184, 352, 567, 739, 832, 835, 1213
PleI	GAGTC	2 cut(s)	1089, 1259
PpsI	GAGTC	2 cut(s)	1089, 1259
PscI	ACATGT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	966
Psp6I	CCWGG	3 cut(s)	56, 82, 676
PspGI	CCWGG	3 cut(s)	56, 82, 676
PspN4I	GGNNCC	2 cut(s)	55, 611
PspPI	GGNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	2 cut(s)	121, 689
PsuI	RGATCY	1 cut(s)	1003
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	51, 660
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	4 cut(s)	108, 474, 702, 1122
SatI	GCNGC	7 cut(s)	183, 351, 566, 738, 831, 834, 1212
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	1090, 1260
ScrFI	CCNGG	5 cut(s)	58, 84, 678, 773, 1105
SfaNI	GCATC	2 cut(s)	885, 1223
SfcI	CTRYAG	2 cut(s)	122, 286
SgrAI	CRCCGGYG	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	51, 660
SmlI	CTYRAG	2 cut(s)	11, 515
SmoI	CTYRAG	2 cut(s)	11, 515
SphI	GCATGC	1 cut(s)	1065
Sse9I	AATT	8 cut(s)	89, 170, 257, 272, 454, 704, 806, 1037
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	5 cut(s)	56, 82, 676, 771, 1103
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	4 cut(s)	167, 691, 1051, 1269
TaiI	ACGT	2 cut(s)	868, 1130
TaqI	TCGA	3 cut(s)	312, 465, 930
TasI	AATT	8 cut(s)	89, 170, 257, 272, 454, 704, 806, 1037
TfiI	GAWTC	6 cut(s)	43, 112, 216, 794, 1171, 1283
Tru1I	TTAA	4 cut(s)	108, 474, 702, 1122
Tru9I	TTAA	4 cut(s)	108, 474, 702, 1122
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	7 cut(s)	182, 350, 565, 737, 830, 833, 1211
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	8 cut(s)	23, 335, 599, 738, 770, 804, 1014, 1150
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	1056
XapI	RAATTY	4 cut(s)	170, 257, 272, 1037
XceI	RCATGY	2 cut(s)	213, 1065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	1157
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.