Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0025078

Physical Location & Seq

Genomic Coordinates Forward (+)

36109607 .. 36112495

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATCGAAGGTTTTAACCATATCCTAACTGATCTCACAGCTCTCTGGTATCGGCTCAAGGTTGAGAAAGCCGAGTGGATCATATACATTACTATTGAGCAGAAGCAGCAGAAGAGCAATGTTATGAAGTTAGCTGGAACTGCTGGTTGGCTCCCAACGGAGTGTGGCTCGTTCAAGACATTGCCTAAAGCTAGCCATATTGGTGTTGGTCTTGTTCCTGGATCAGATACTGTCAAAGCTTTTAAATTGTTTGATCTACTTGATGAAGCTAAGAGCGCAGCCCGAAGACACCTTATGAAGTGTGGTGATGGCCGGGGTAACAAGTGGGATGAAGATTCTCTTGAAAAATTGGCAGAAACTATTGGTTGTGCTGCTGCCAAGTATGTTTACTTGCAGGATGATAGACGTGGCAATGATAAGTCTGATTTTGTTCGGATGCTAAATGACAGGGAAATCAATGTTTACTTTCTCGATCATGGTTCTTTCTGTTATACATGGAGGCATTATAAAGAAGTGGAGAACGACGATATTGTGTTGGATGAAGATCTGGAATGTGAACTGGGGTCACATTTGCTGAAATTTGCTGAGACAGTGATGACAGCATGCAAATCTGTCAAACCGAGTCTATTGTGTGGTTATTTATCCCGGCTGATACAAATCTTTAAGACGTTTTCAGATGATTTCAAGGCTCGGAAGGTCTTCATCTTTAGGAATCTGGAGTTATGGAGGAGAAAAACATTGCTTTGTGAGGCAGCATCTTCTATAATGCGCCGGTGTTTTGATCTACTCGGAGTCCCTGATCCATTACTGTTATGTAGTGAAGAATCTGATAAATCTGCTGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

282

Amino Acids

32.23

Weight (kDa)

6.61

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	5 - 138	1e-06	tRNA synthetases class I (R), catalytic domain
DALR_1	PF05746	171 - 266	1.3e-10	DALR anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0025078)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275621
rosa_samantha	Rh6CG212000 Rh6DG202600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AclWI	GGATC	3 cut(s)	86, 229, 794
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	578
AgsI	TTSAA	3 cut(s)	175, 344, 685
AjiI	CACGTC	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	5 cut(s)	41, 134, 191, 239, 269
AluI	AGCT	5 cut(s)	41, 134, 191, 239, 269
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	3 cut(s)	86, 229, 794
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	5 cut(s)	106, 278, 371, 374, 752
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	278, 771
AsuC2I	CCSGG	2 cut(s)	314, 646
AsuHPI	GGTGA	1 cut(s)	317
AsuNHI	GCTAGC	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	292, 691
BbvI	GCAGC	5 cut(s)	118, 290, 358, 361, 764
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	314, 646
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	5 cut(s)	107, 279, 372, 375, 753
BlsI	GCNGC	5 cut(s)	108, 280, 373, 376, 754
Bme1390I	CCNGG	3 cut(s)	219, 314, 646
BmgBI	CACGTC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	3 cut(s)	219, 314, 646
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	2 cut(s)	426, 764
BmtI	GCTAGC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	569
BpiI	GAAGAC	2 cut(s)	292, 691
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	314, 646
BsaBI	GATNNNNATC	2 cut(s)	543, 656
BsaJI	CCNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	771
Bse1I	ACTGG	1 cut(s)	564
Bse3DI	GCAATG	4 cut(s)	124, 179, 418, 737
Bse8I	GATNNNNATC	2 cut(s)	543, 656
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	4 cut(s)	334, 403, 441, 544
BseJI	GATNNNNATC	2 cut(s)	543, 656
BseMI	GCAATG	4 cut(s)	124, 179, 418, 737
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	742
BseXI	GCAGC	5 cut(s)	118, 290, 358, 361, 764
BshFI	GGCC	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	313, 646, 772
BslFI	GGGAC	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	312
Bsp143I	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	86, 229, 794
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	4 cut(s)	124, 179, 418, 737
BsrFI	RCCGGY	1 cut(s)	771
BsrI	ACTGG	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	771
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	232, 592, 810
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	193, 604, 841
BstDEI	CTNAG	2 cut(s)	270, 585
BstF5I	GGATG	4 cut(s)	334, 403, 441, 544
BstHHI	GCGC	2 cut(s)	278, 771
BstKTI	GATC	9 cut(s)	6, 34, 81, 224, 256, 475, 547, 784, 802
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 140, 275
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	3 cut(s)	217, 312, 644
BstV1I	GCAGC	5 cut(s)	118, 290, 358, 361, 764
BstV2I	GAAGAC	2 cut(s)	292, 691
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	334, 403, 441, 544
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	3 cut(s)	193, 604, 841
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	2 cut(s)	278, 771
Cfr10I	RCCGGY	1 cut(s)	771
CviAII	CATG	3 cut(s)	476, 495, 603
DdeI	CTNAG	2 cut(s)	270, 585
DpnI	GATC	9 cut(s)	5, 33, 80, 223, 255, 474, 546, 783, 801
DpnII	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
DraI	TTTAAA	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	479, 498, 606
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	3 cut(s)	475, 494, 602
Fnu4HI	GCNGC	5 cut(s)	107, 279, 372, 375, 753
FokI	GGATG	4 cut(s)	341, 410, 448, 551
Fsp4HI	GCNGC	5 cut(s)	107, 279, 372, 375, 753
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	2 cut(s)	277, 770
GluI	GCNGC	5 cut(s)	107, 279, 372, 375, 753
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	3 cut(s)	313, 646, 772
HhaI	GCGC	2 cut(s)	278, 771
Hin1II	CATG	3 cut(s)	479, 498, 606
Hin6I	GCGC	2 cut(s)	276, 769
HinP1I	GCGC	2 cut(s)	276, 769
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	5 cut(s)	335, 622, 712, 792, 824
HpaII	CCGG	3 cut(s)	313, 646, 772
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	3 cut(s)	388, 463, 557
Hpy188I	TCNGA	7 cut(s)	226, 424, 435, 676, 693, 791, 829
Hpy188III	TCNNGA	5 cut(s)	175, 341, 470, 548, 716
Hpy8I	GTNNAC	3 cut(s)	388, 463, 557
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	3 cut(s)	232, 592, 810
HpyCH4IV	ACGT	2 cut(s)	406, 668
HpyCH4V	TGCA	2 cut(s)	394, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 140, 275
HpyF3I	CTNAG	2 cut(s)	270, 585
HpySE526I	ACGT	2 cut(s)	406, 668
Hsp92II	CATG	3 cut(s)	479, 498, 606
HspAI	GCGC	2 cut(s)	276, 769
Kzo9I	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	5 cut(s)	118, 290, 358, 361, 764
LweI	GCATC	2 cut(s)	426, 764
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	406, 668
MaeIII	GTNAC	2 cut(s)	317, 564
MalI	GATC	9 cut(s)	5, 33, 80, 223, 255, 474, 546, 783, 801
MboI	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
MboII	GAAGA	7 cut(s)	124, 297, 344, 554, 691, 750, 833
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	3 cut(s)	245, 347, 578
MlyI	GAGTC	2 cut(s)	631, 801
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	3 cut(s)	492, 720, 742
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	3 cut(s)	15, 243, 663
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	3 cut(s)	313, 646, 772
MspR9I	CCNGG	3 cut(s)	219, 314, 646
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	106, 140, 275
NciI	CCSGG	2 cut(s)	314, 646
NdeII	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	3 cut(s)	479, 498, 606
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	564
NspI	RCATGY	1 cut(s)	606
PaeI	GCATGC	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	3 cut(s)	335, 712, 824
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	108, 280, 373, 376, 754
PleI	GAGTC	2 cut(s)	630, 800
PpsI	GAGTC	2 cut(s)	630, 800
PsiI	TTATAA	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	152
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	15, 243, 663
SatI	GCNGC	5 cut(s)	107, 279, 372, 375, 753
Sau3AI	GATC	9 cut(s)	3, 31, 78, 221, 253, 472, 544, 781, 799
SchI	GAGTC	2 cut(s)	631, 801
ScrFI	CCNGG	3 cut(s)	219, 314, 646
SfaNI	GCATC	2 cut(s)	426, 764
SgrAI	CRCCGGYG	1 cut(s)	771
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	3 cut(s)	245, 347, 578
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	3 cut(s)	217, 312, 644
TaaI	ACNGT	3 cut(s)	232, 592, 810
TaiI	ACGT	2 cut(s)	409, 671
TaqI	TCGA	2 cut(s)	6, 471
TasI	AATT	3 cut(s)	245, 347, 578
TfiI	GAWTC	3 cut(s)	335, 712, 824
Tru1I	TTAA	3 cut(s)	15, 243, 663
Tru9I	TTAA	3 cut(s)	15, 243, 663
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	564
TseI	GCWGC	5 cut(s)	106, 278, 371, 374, 752
Tsp45I	GTSAC	1 cut(s)	564
TspDTI	ATGAA	6 cut(s)	140, 279, 311, 345, 555, 691
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.