Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0025078

Physical Location & Seq

Genomic Coordinates Forward (+)

35248852 .. 35251508

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGTTAGCTGGAACTGCTGGTTGGCTCCTAACCGAGTGTGGCTCGTTCAAGACATTGCCTAAAGCTAGCCATATTGGTGTTGGTCTTGTTCCTGGATCAGATACTGTCAAAGCTTTTAAATTGTTTGATCTACTTGATGAAGCTAAGAGCGCAGCCCGAAGACACCTTATGAAGTGTGGTGATGGCCGGGGTAACAAGTGGGATGAAGATTCTCTTGAAAAATTGGCAGAAACTATTGGTTGTGCTGCTGCCAAGTATGTTTATTTGCAGGATGATAGACGTGGCAATGATAAGTCTGATTTTGTTCGGATGCTAAATGACAGGGAAATCAATGTTTACTTTCTCGATCATGGTTCTTTCTGTTATACATGGAGGCATTATAAAGAAGTGGAGAACGACGATATTGTGTTGGATGAAGATCTGGAATGTGAACTGGGGTCACATTTGCTGAAATTTGCTGAGACAGTGATGACAGCATGCAAATCTGTCAAACCGAGTCTATTGTGTGGTTATTTATCCCGGCTGATACAAATCTTTAAGACGTTTTCAGATGATTTCAAGGCTCGGAAGGTCTTCGTCTTTAGGAATCTGGAGTTATGGAGGAGAAAAACATTGCTTTGTGAGGCAGCATCTTCTATCATGCGCCGGTGTTTTGATCTACTCGGAGTCCCTGATCCATTACTGTTATGTAGTGAAGAATCTGATAAATCTGCTGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

241

Amino Acids

27.29

Weight (kDa)

6.53

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DALR_1	PF05746	130 - 225	5.4e-11	DALR anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0025078)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275621
rosa_samantha	Rh6CG212000 Rh6DG202600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AclWI	GGATC	2 cut(s)	106, 671
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	455
AgsI	TTSAA	3 cut(s)	52, 221, 562
AjiI	CACGTC	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	4 cut(s)	11, 68, 116, 146
AluI	AGCT	4 cut(s)	11, 68, 116, 146
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	106, 671
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	4 cut(s)	155, 248, 251, 629
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	2 cut(s)	155, 648
AsuC2I	CCSGG	2 cut(s)	191, 523
AsuHPI	GGTGA	1 cut(s)	194
AsuNHI	GCTAGC	1 cut(s)	68
BbsI	GAAGAC	2 cut(s)	169, 568
BbvI	GCAGC	4 cut(s)	167, 235, 238, 641
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	2 cut(s)	191, 523
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	69
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	4 cut(s)	156, 249, 252, 630
BlsI	GCNGC	4 cut(s)	157, 250, 253, 631
Bme1390I	CCNGG	3 cut(s)	96, 191, 523
BmgBI	CACGTC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	3 cut(s)	96, 191, 523
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	303, 641
BmtI	GCTAGC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	446
BpiI	GAAGAC	2 cut(s)	169, 568
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	614
BpuMI	CCSGG	2 cut(s)	191, 523
BsaBI	GATNNNNATC	2 cut(s)	420, 533
BsaJI	CCNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	1 cut(s)	441
Bse3DI	GCAATG	3 cut(s)	56, 295, 614
Bse8I	GATNNNNATC	2 cut(s)	420, 533
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	4 cut(s)	211, 280, 318, 421
BseJI	GATNNNNATC	2 cut(s)	420, 533
BseMI	GCAATG	3 cut(s)	56, 295, 614
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	619
BseXI	GCAGC	4 cut(s)	167, 235, 238, 641
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	190, 523, 649
BslFI	GGGAC	1 cut(s)	656
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	29
BspOI	GCTAGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	106, 671
BsrDI	GCAATG	3 cut(s)	56, 295, 614
BsrFI	RCCGGY	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	3 cut(s)	109, 469, 687
BstC8I	GCNNGC	3 cut(s)	70, 481, 718
BstDEI	CTNAG	2 cut(s)	147, 462
BstF5I	GGATG	4 cut(s)	211, 280, 318, 421
BstHHI	GCGC	2 cut(s)	155, 648
BstKTI	GATC	6 cut(s)	101, 133, 352, 424, 661, 679
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 152
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	3 cut(s)	94, 189, 521
BstV1I	GCAGC	4 cut(s)	167, 235, 238, 641
BstV2I	GAAGAC	2 cut(s)	169, 568
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	4 cut(s)	211, 280, 318, 421
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	3 cut(s)	70, 481, 718
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	2 cut(s)	155, 648
Cfr10I	RCCGGY	1 cut(s)	648
CviAII	CATG	4 cut(s)	353, 372, 480, 643
DdeI	CTNAG	2 cut(s)	147, 462
DpnI	GATC	6 cut(s)	100, 132, 351, 423, 660, 678
DpnII	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
DraI	TTTAAA	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	4 cut(s)	356, 375, 483, 646
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	4 cut(s)	352, 371, 479, 642
Fnu4HI	GCNGC	4 cut(s)	156, 249, 252, 630
FokI	GGATG	4 cut(s)	218, 287, 325, 428
Fsp4HI	GCNGC	4 cut(s)	156, 249, 252, 630
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	2 cut(s)	154, 647
GluI	GCNGC	4 cut(s)	156, 249, 252, 630
GsuI	CTGGAG	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	3 cut(s)	190, 523, 649
HhaI	GCGC	2 cut(s)	155, 648
Hin1II	CATG	4 cut(s)	356, 375, 483, 646
Hin6I	GCGC	2 cut(s)	153, 646
HinP1I	GCGC	2 cut(s)	153, 646
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	5 cut(s)	212, 499, 589, 669, 701
HpaII	CCGG	3 cut(s)	190, 523, 649
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	340, 434
Hpy188I	TCNGA	7 cut(s)	103, 301, 312, 553, 570, 668, 706
Hpy188III	TCNNGA	5 cut(s)	52, 218, 347, 425, 593
Hpy8I	GTNNAC	2 cut(s)	340, 434
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	3 cut(s)	109, 469, 687
HpyCH4IV	ACGT	2 cut(s)	283, 545
HpyCH4V	TGCA	2 cut(s)	271, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 152
HpyF3I	CTNAG	2 cut(s)	147, 462
HpySE526I	ACGT	2 cut(s)	283, 545
Hsp92II	CATG	4 cut(s)	356, 375, 483, 646
HspAI	GCGC	2 cut(s)	153, 646
Kzo9I	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	4 cut(s)	167, 235, 238, 641
LweI	GCATC	2 cut(s)	303, 641
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	283, 545
MaeIII	GTNAC	2 cut(s)	194, 441
MalI	GATC	6 cut(s)	100, 132, 351, 423, 660, 678
MboI	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
MboII	GAAGA	6 cut(s)	174, 221, 431, 568, 627, 710
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	3 cut(s)	122, 224, 455
MlyI	GAGTC	2 cut(s)	508, 678
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	369, 597, 619
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	2 cut(s)	120, 540
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	3 cut(s)	190, 523, 649
MspR9I	CCNGG	3 cut(s)	96, 191, 523
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	17, 152
NciI	CCSGG	2 cut(s)	191, 523
NdeII	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
NheI	GCTAGC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	356, 375, 483, 646
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	441
NspI	RCATGY	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	3 cut(s)	212, 589, 701
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	157, 250, 253, 631
PleI	GAGTC	2 cut(s)	507, 677
PpsI	GAGTC	2 cut(s)	507, 677
PsiI	TTATAA	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	120, 540
SatI	GCNGC	4 cut(s)	156, 249, 252, 630
Sau3AI	GATC	6 cut(s)	98, 130, 349, 421, 658, 676
SchI	GAGTC	2 cut(s)	508, 678
ScrFI	CCNGG	3 cut(s)	96, 191, 523
SetI	ASST	8 cut(s)	13, 70, 118, 148, 171, 286, 548, 576
SfaNI	GCATC	2 cut(s)	303, 641
SgrAI	CRCCGGYG	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	78
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	3 cut(s)	122, 224, 455
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	94, 189, 521
TaaI	ACNGT	3 cut(s)	109, 469, 687
TaiI	ACGT	2 cut(s)	286, 548
TaqI	TCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	122, 224, 455
TfiI	GAWTC	3 cut(s)	212, 589, 701
Tru1I	TTAA	2 cut(s)	120, 540
Tru9I	TTAA	2 cut(s)	120, 540
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	4 cut(s)	155, 248, 251, 629
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	5 cut(s)	17, 156, 188, 222, 432
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.