Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020589

Physical Location & Seq

Genomic Coordinates Reverse (-)

37951546 .. 37953035

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGGGCACATTACATAAAATCTAGGCGTTGCAATACTGCCAAAGCTGTTCTTGCTTTAGAGTCTACATATAAATGGGCTCTAAGCGGCACGCCCCTTCAGAATCGTGTTGGAGAACTTTACTCATTGGTCTGCTACTTGCAATTAGTCCCATACTCGTATTACTTGTGTAAGGACTGTGACTGCAGAACTCTTGATCATAGTTTCACACTAATTGTTACAGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

76

Amino Acids

8.61

Weight (kDa)

8.65

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	3 - 53	2e-11	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0276001
rosa_samantha	Rh1AG009600 Rh1DG005000 Rh6BG213600 Rh6DG205700
rosa_wichuraiana	Rw0G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	83
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	10, 82
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	188
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	92
CviJI	RGCY	2 cut(s)	47, 80
CviKI_1	RGCY	2 cut(s)	47, 80
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	5 cut(s)	17, 70, 72, 154, 201
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	62, 103
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	33, 142, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	1 cut(s)	207
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	179, 217
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	10, 82
MluCI	AATT	2 cut(s)	143, 213
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	91
MslI	CAYNNNNRTG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	73
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	10, 82
SetI	ASST	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	184
SgeI	CNNG	8 cut(s)	36, 65, 103, 119, 151, 169, 178, 206
SmiMI	CAYNNNNRTG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	143, 213
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	2 cut(s)	143, 213
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.