Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020589

Physical Location & Seq

Genomic Coordinates Forward (+)

1507270 .. 1508060

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAACCCTCCAACTGGATCTCCGATGTCAAGCTGGGCTCTAAGCAGCACGCCCCTTCAGAATCGTGTTGGAGAGATATATTGACTATAATCAAGGTCCGCTACTTGCAATTAGTCCCATACTCGTATTACTTGTGTAAGGACTGTGACTGCAGAACTCTTGATCATAGTTCCACACTAATTGTTACAGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

65

Amino Acids

7.48

Weight (kDa)

6.69

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0276001
rosa_samantha	Rh1AG009600 Rh1DG005000 Rh6BG213600 Rh6DG205700
rosa_wichuraiana	Rw0G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	15
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AlwI	GGATC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	58
BseYI	CCCAGC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	18, 163
BspACI	CCGC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	155
BspPI	GGATC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	18, 163
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	21, 166
BstMBI	GATC	2 cut(s)	18, 163
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviJI	RGCY	2 cut(s)	34, 39
CviKI_1	RGCY	2 cut(s)	34, 39
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	20, 165
DpnII	GATC	2 cut(s)	18, 163
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	41
FaiI	YATR	4 cut(s)	80, 89, 121, 168
FaqI	GGGAC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	25, 61
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	109, 153
HpyF3I	CTNAG	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	18, 163
LpnPI	CCDG	2 cut(s)	20, 174
Lsp1109I	GCAGC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	146, 184
MalI	GATC	2 cut(s)	20, 165
MboI	GATC	2 cut(s)	18, 163
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	110, 180
MmeI	TCCRAC	2 cut(s)	36, 50
MnlI	CCTC	1 cut(s)	19
NdeII	GATC	2 cut(s)	18, 163
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	18
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	18, 163
Sau96I	GGNCC	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	2 cut(s)	36, 99
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	110, 180
SsiI	CCGC	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	146
TasI	AATT	2 cut(s)	110, 180
TfiI	GAWTC	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.