Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0020589

Physical Location & Seq

Genomic Coordinates Forward (+)

829831 .. 832729

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGGGCACATTACATAAAATCTAGGCGTTGCAATACTTCAAAAGCTATTCTTGCTTTAGAGTCTACATATAAATGGGCTCTAAGCGGCACGCCCTTTCAGAATCGTGTTGGAGAACTTTACTCATTGGTCCGCTACTTGCAATTAGTCCCATACTCGTATTACTTGTGTAAGGACTGTGACTGCAGAACTCTTGATCATAGTTCCACACTAATTGTTACAGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

76

Amino Acids

8.67

Weight (kDa)

9.0

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	3 - 53	2.5e-11	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0020589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0276001
rosa_samantha	Rh1AG009600 Rh1DG005000 Rh6BG213600 Rh6DG205700
rosa_wichuraiana	Rw0G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	2 cut(s)	87, 133
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	10, 82
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	87, 133
BspMAI	CTGCAG	1 cut(s)	188
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviJI	RGCY	2 cut(s)	47, 80
CviKI_1	RGCY	2 cut(s)	47, 80
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	5 cut(s)	17, 70, 72, 154, 201
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	62, 103
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	33, 142, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	1 cut(s)	207
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	179, 217
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	10, 82
MluCI	AATT	2 cut(s)	143, 213
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	91
MslI	CAYNNNNRTG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	73
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	10, 82
SetI	ASST	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	184
SgeI	CNNG	8 cut(s)	36, 65, 103, 119, 151, 169, 178, 206
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	143, 213
SsiI	CCGC	2 cut(s)	87, 133
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	2 cut(s)	143, 213
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.