Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00824

Orthogroup ID

OG0020589

Physical Location & Seq

Genomic Coordinates Forward (+)

54119 .. 54702

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGGGTTAGTAATTCATCGATTCAAAGCCCTAATTTCCCTGTTTTTGACTTTGAAACCCTCTTCTCGAGCTCATCTCCTTTCTTGAACGGAACCCTCCAACTGGATCTCCGATGTCCTCCCACTGCATCTTTTTTTACTGCAAAAGCTGTGCTTGCTTTAGAGTCTACATATAAATGGGCTCTAAGCGGCACGCCCCTTCAGAATCGTGTTGGAGAACTTTACTCATTGGTCCGCTACTTGCAATTAGTCCCATACTCGTATTACTTGTGTAAGGACTGTGACTACAGAACTCTTGGTCATAGTTCCACACTAATTGTTACAGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

6.52

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	47 - 87	3.9e-08	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0276001
rosa_samantha	Rh1AG009600 Rh1DG005000 Rh6BG213600 Rh6DG205700
rosa_wichuraiana	Rw0G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	2 cut(s)	189, 235
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	26, 56, 88
AluBI	AGCT	2 cut(s)	72, 149
AluI	AGCT	2 cut(s)	72, 149
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	74, 184
Bbv12I	GWGCWC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	286
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bsa29I	ATCGAT	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	74, 184
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	189, 235
BspDI	ATCGAT	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	156, 194
BstDEI	CTNAG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	156, 194
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	20
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviJI	RGCY	4 cut(s)	30, 72, 149, 182
CviKI_1	RGCY	4 cut(s)	30, 72, 149, 182
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	74, 184
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	74, 184
FaiI	YATR	4 cut(s)	172, 174, 256, 303
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	190
FriOI	GRGCYC	2 cut(s)	74, 184
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	22, 164, 205
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	113, 204
Hpy188III	TCNNGA	2 cut(s)	67, 85
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	128, 143, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	54, 89, 309
LweI	GCATC	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	281, 319
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	74, 184
MluCI	AATT	4 cut(s)	13, 34, 245, 315
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	124, 193
MnlI	CCTC	3 cut(s)	71, 107, 129
MslI	CAYNNNNRTG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	22, 205
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	74
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	74, 184
SetI	ASST	2 cut(s)	74, 151
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	13, 34, 245, 315
SsiI	CCGC	2 cut(s)	189, 235
SstI	GAGCTC	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	20, 68
TasI	AATT	4 cut(s)	13, 34, 245, 315
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	22, 205
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.