Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022794

Physical Location & Seq

Genomic Coordinates Forward (+)

47699604 .. 47700433

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACAGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATGTTGTTTGGATCAGGTATTCAACCTCCAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

82

Amino Acids

9.07

Weight (kDa)

9.89

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0284471
rosa_roxburghii	Rroxscaffold_4G00290320 Rroxscaffold_4G00323250
rosa_samantha	Rh1AG183200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	105, 234
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	98
CviAII	CATG	3 cut(s)	29, 172, 190
CviJI	RGCY	3 cut(s)	21, 85, 92
CviKI_1	RGCY	3 cut(s)	21, 85, 92
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraI	TTTAAA	1 cut(s)	153
FaeI	CATG	3 cut(s)	32, 175, 193
FaiI	YATR	5 cut(s)	30, 173, 191, 211, 213
FatI	CATG	3 cut(s)	28, 171, 189
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	32, 175, 193
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	101, 186
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	6, 75, 178
HpyCH4V	TGCA	3 cut(s)	28, 142, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	32, 175, 193
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	222
LpnPI	CCDG	6 cut(s)	3, 32, 39, 73, 128, 211
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	4 cut(s)	21, 30, 33, 136
MluCI	AATT	2 cut(s)	65, 74
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	2 cut(s)	151, 247
MseI	TTAA	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	222
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	32, 175, 193
PaqCI	CACCTGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	101, 186
PkrI	GCNGC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	222
SetI	ASST	7 cut(s)	17, 51, 147, 162, 170, 230, 239
Sse9I	AATT	2 cut(s)	65, 74
SspMI	CTAG	1 cut(s)	93
TasI	AATT	2 cut(s)	65, 74
TfiI	GAWTC	2 cut(s)	101, 186
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	160, 178
TspGWI	ACGGA	1 cut(s)	128
XapI	RAATTY	1 cut(s)	65
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.