Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0022794

Physical Location & Seq

Genomic Coordinates Reverse (-)

34806880 .. 34818443

Gene Structure 11564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG183200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATTGGTCTAAGCTTAAAAAAAGGGCTTCTGGGGCGGAAGAGGACTGCGCATATTGGGTCCAAGAAAGCTGAGAGAGGTAGGGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTATGCATGAGATTTCTTCTTCACAGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATGTTGTTTGGATCAGAGGCTTCTTTACTGGTGATAGTTCAAATGGAAGTAGTGAACCTGGAAGTACACTTGAAGAAGCCATTCGAATTAGTATTATTGCAGTCGCCATTTTTGTCGTTTCATTACCTGAAGTGCTTCCATTAGCTTTCAACATAAGCTGTCTCAGCTCAATGAAAAAGATGAAGGCAGATAACATCTCGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCACTGATGTAGTCTGTGACATGACTGGAATTACTTTGGACAATGTGGTAATTAAACCTGAAGCCTTTGCTGAACTGAAGGTGAAGGAAATCAAGAATGTGCGGTTGGCAATGACCTCAATGTCCAAAAGTCAGGCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

228

Amino Acids

24.61

Weight (kDa)

9.69

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0284471
rosa_roxburghii	Rroxscaffold_4G00290320 Rroxscaffold_4G00323250
rosa_samantha	Rh1AG183200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
AasI	GACNNNNNNGTC	1 cut(s)	664
Acc16I	TGCGCA	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	229
AciI	CCGC	3 cut(s)	37, 511, 646
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	3 cut(s)	456, 624, 641
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	201, 348, 380, 457
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	6 cut(s)	15, 71, 452, 465, 474, 521
AluI	AGCT	6 cut(s)	15, 71, 452, 465, 474, 521
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	3 cut(s)	115, 515, 537
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	387, 441
AspLEI	GCGC	2 cut(s)	52, 194
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	350, 637
AsuII	TTCGAA	1 cut(s)	391
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	154, 340, 574
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	3 cut(s)	63, 196, 484
BseNI	ACTGG	3 cut(s)	154, 340, 574
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	3 cut(s)	117, 517, 539
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	117, 517, 539
Bsp119I	TTCGAA	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	3 cut(s)	37, 511, 646
BspANI	GGCC	3 cut(s)	117, 517, 539
BspCNI	CTCAG	3 cut(s)	64, 195, 483
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	229
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	154, 340, 574
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	2 cut(s)	35, 97
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	190, 519
BstDEI	CTNAG	4 cut(s)	11, 72, 182, 470
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	52, 194
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 302, 471
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	117, 517, 539
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	190, 519
CfoI	GCGC	2 cut(s)	52, 194
Cfr13I	GGNCC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	5 cut(s)	125, 268, 286, 535, 565
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	4 cut(s)	11, 72, 182, 470
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraI	TTTAAA	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	35, 97
EarI	CTCTTC	2 cut(s)	35, 97
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	3 cut(s)	456, 624, 641
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	5 cut(s)	128, 271, 289, 538, 568
FatI	CATG	5 cut(s)	124, 267, 285, 534, 564
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	189
FspI	TGCGCA	1 cut(s)	51
GlaI	GCGC	2 cut(s)	51, 193
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	117, 517, 539
HhaI	GCGC	2 cut(s)	52, 194
Hin1II	CATG	5 cut(s)	128, 271, 289, 538, 568
Hin6I	GCGC	2 cut(s)	50, 192
HinP1I	GCGC	2 cut(s)	50, 192
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	197, 282
HphI	GGTGA	2 cut(s)	350, 637
Hpy166II	GTNNAC	2 cut(s)	362, 374
Hpy188I	TCNGA	2 cut(s)	281, 323
Hpy188III	TCNNGA	1 cut(s)	637
Hpy8I	GTNNAC	2 cut(s)	362, 374
HpyAV	CCTTC	7 cut(s)	95, 102, 171, 274, 484, 616, 622
HpyCH4V	TGCA	5 cut(s)	124, 238, 305, 407, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 302, 471
HpyF3I	CTNAG	4 cut(s)	11, 72, 182, 470
Hsp92II	CATG	5 cut(s)	128, 271, 289, 538, 568
HspAI	GCGC	2 cut(s)	50, 192
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	145, 560
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	7 cut(s)	52, 84, 117, 126, 129, 232, 392
MluCI	AATT	5 cut(s)	161, 170, 393, 573, 594
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	36, 71, 247, 317, 507, 670
Mph1103I	ATGCAT	1 cut(s)	126
MroXI	GAANNNNTTC	2 cut(s)	387, 441
MseI	TTAA	3 cut(s)	17, 248, 597
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	34, 302, 471
NcoI	CCATGG	1 cut(s)	534
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	188
NlaIII	CATG	5 cut(s)	128, 271, 289, 538, 568
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	560
NsbI	TGCGCA	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	97
PdmI	GAANNNNTTC	2 cut(s)	387, 441
PfeI	GAWTC	2 cut(s)	197, 282
PkrI	GCNGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	506
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	17, 248, 597
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	5 cut(s)	161, 170, 393, 573, 594
SsiI	CCGC	3 cut(s)	37, 511, 646
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	534
TaqI	TCGA	1 cut(s)	391
TasI	AATT	5 cut(s)	161, 170, 393, 573, 594
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	197, 282
Tru1I	TTAA	3 cut(s)	17, 248, 597
Tru9I	TTAA	3 cut(s)	17, 248, 597
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	5 cut(s)	256, 274, 417, 494, 503
TspGWI	ACGGA	2 cut(s)	224, 232
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	161
XmnI	GAANNNNTTC	2 cut(s)	387, 441
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.