Rroxscaffold_4G00290320

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0022794
Physical Location & Seq
Reverse (-)
10841614 .. 10843236
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290320.1

Sequence Viewer

Length: 336 bp
ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGTGGAGGCCAGCTGTATGTGAAACCATGGCCTTGTGCACTGATGTAGTACGTGACATGACTGGAATTACTTTGGACAATGTGGCTATTGTAACTGGAAAAGGGCCAGTTGAGAACCTCTATGACCACGTTGCTGATCCCGTGGCCAACAATGCATGGGCATACGCTACCAACTTCGTCCCCGGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

7.81

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022794)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284471
rosa_roxburghii Rroxscaffold_4G00290320 Rroxscaffold_4G00323250
rosa_samantha Rh1AG183200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 185
Alw44I GTGCAC 1 cut(s) 181
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 5 cut(s) 19, 152, 174, 248, 288
ApaLI GTGCAC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 2 cut(s) 327, 328
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 185
BcnI CCSGG 2 cut(s) 327, 328
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 327, 328
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 327, 328
BmrI ACTGGG 1 cut(s) 63
BmtI GCTAGC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 327, 328
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 171, 285, 325, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 4 cut(s) 58, 211, 244, 251
BseDI CCNNGG 4 cut(s) 171, 285, 325, 326
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 4 cut(s) 58, 211, 244, 251
BseSI GKGCMC 1 cut(s) 185
BshFI GGCC 5 cut(s) 21, 154, 176, 250, 290
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 5 cut(s) 21, 154, 176, 250, 290
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 5 cut(s) 21, 154, 176, 250, 290
BspCNI CTCAG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 133
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 275
BsrI ACTGG 4 cut(s) 58, 211, 244, 251
BssECI CCNNGG 4 cut(s) 171, 285, 325, 326
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 94, 156
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 2 cut(s) 171, 285
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 325, 326
BstSLI GKGCMC 1 cut(s) 185
BsuRI GGCC 5 cut(s) 21, 154, 176, 250, 290
BtgI CCRYGG 2 cut(s) 171, 285
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 94, 156
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 248
Cfr9I CCCGGG 1 cut(s) 326
Csp6I GTAC 1 cut(s) 194
CviAII CATG 4 cut(s) 29, 172, 202, 300
CviJI RGCY 9 cut(s) 21, 85, 92, 154, 158, 176, 230, 250, 290
CviKI_1 RGCY 9 cut(s) 21, 85, 92, 154, 158, 176, 230, 250, 290
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 32, 175, 205, 303
FaiI YATR 7 cut(s) 30, 163, 173, 203, 267, 301, 307
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 28, 171, 201, 299
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 5 cut(s) 21, 154, 176, 250, 290
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 32, 175, 205, 303
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 6, 75
HpyCH4IV ACGT 2 cut(s) 196, 273
HpyCH4V TGCA 4 cut(s) 28, 142, 183, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 2 cut(s) 196, 273
Hsp92II CATG 4 cut(s) 32, 175, 205, 303
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 9 cut(s) 3, 32, 39, 73, 128, 168, 192, 225, 264
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 196, 273
MaeIII GTNAC 3 cut(s) 49, 197, 235
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 4 cut(s) 21, 30, 33, 136
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 3 cut(s) 65, 74, 210
MluNI TGGCCA 1 cut(s) 290
MnlI CCTC 2 cut(s) 144, 272
Mox20I TGGCCA 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 327, 328
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 2 cut(s) 327, 328
NcoI CCATGG 1 cut(s) 171
NdeII GATC 1 cut(s) 280
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 32, 175, 205, 303
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 197
PspPI GGNCC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 327, 328
SduI GDGCHC 1 cut(s) 185
SetI ASST 7 cut(s) 17, 51, 147, 160, 199, 264, 276
SmaI CCCGGG 1 cut(s) 328
Sse9I AATT 3 cut(s) 65, 74, 210
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 325, 326
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 2 cut(s) 199, 276
TasI AATT 3 cut(s) 65, 74, 210
TfiI GAWTC 1 cut(s) 101
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 2 cut(s) 128, 136
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 1 cut(s) 190
VneI GTGCAC 1 cut(s) 181
XapI RAATTY 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 326
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.