Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0022794

Physical Location & Seq

Genomic Coordinates Forward (+)

53910937 .. 53913568

Gene Structure 2632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTCATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATGTTATTTGGATCAGAGGCTTCTTTACTGGTGATAGTTCAAATGGAAGTAGTGAACCTGGAAGTACACTTGAAGAAGCCATTCGAATTAGTATTATTGTAGTCGCCATTTTTGTCGTTTCATTACCTGAAGTGCTTCCATTAGCTTTCAACATAAGGTGTGGAGGCCAGCTGTATGTGAAACCATGGCCTTGTGCACTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

9.06

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022794)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0284471
rosa_roxburghii	Rroxscaffold_4G00290320 Rroxscaffold_4G00323250
rosa_samantha	Rh1AG183200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	105, 252, 284, 361
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	356, 382
AluI	AGCT	2 cut(s)	356, 382
Alw21I	GWGCWC	1 cut(s)	409
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	3 cut(s)	19, 376, 398
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	65
Asp700I	GAANNNNTTC	2 cut(s)	291, 345
AspLEI	GCGC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmrI	ACTGGG	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	58, 244
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	58, 244
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	3 cut(s)	21, 378, 400
BsiHKAI	GWGCWC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	3 cut(s)	21, 378, 400
Bsp119I	TTCGAA	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	395
BspANI	GGCC	3 cut(s)	21, 378, 400
BspCNI	CTCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	58, 244
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	94, 380
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	21, 378, 400
BtgI	CCRYGG	1 cut(s)	395
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	94, 380
CfoI	GCGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	4 cut(s)	29, 172, 190, 396
CviJI	RGCY	9 cut(s)	21, 85, 92, 231, 290, 356, 378, 382, 400
CviKI_1	RGCY	9 cut(s)	21, 85, 92, 231, 290, 356, 378, 382, 400
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraI	TTTAAA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	32, 175, 193, 399
FaiI	YATR	8 cut(s)	30, 173, 191, 211, 213, 365, 387, 397
FatI	CATG	4 cut(s)	28, 171, 189, 395
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	21, 378, 400
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	32, 175, 193, 399
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	101, 186
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	266, 278, 407
Hpy188I	TCNGA	2 cut(s)	185, 227
Hpy8I	GTNNAC	3 cut(s)	266, 278, 407
HpyAV	CCTTC	3 cut(s)	6, 75, 178
HpyCH4V	TGCA	4 cut(s)	28, 142, 209, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	32, 175, 193, 399
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	5 cut(s)	21, 30, 33, 136, 296
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	3 cut(s)	65, 74, 297
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	151, 221, 368
MroXI	GAANNNNTTC	2 cut(s)	291, 345
MseI	TTAA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	222
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	4 cut(s)	32, 175, 193, 399
NspV	TTCGAA	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	133
PdmI	GAANNNNTTC	2 cut(s)	291, 345
PfeI	GAWTC	2 cut(s)	101, 186
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	295
Sse9I	AATT	3 cut(s)	65, 74, 297
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	395
TaqI	TCGA	1 cut(s)	295
TasI	AATT	3 cut(s)	65, 74, 297
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	2 cut(s)	101, 186
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	160, 178, 321
TspGWI	ACGGA	2 cut(s)	128, 136
VneI	GTGCAC	1 cut(s)	405
XapI	RAATTY	1 cut(s)	65
XmnI	GAANNNNTTC	2 cut(s)	291, 345
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.