RchiOBHm_Chr6g0285671

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020582
Physical Location & Seq
Forward (+)
48988031 .. 48988366
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGATGTTACTAATGAGCCATCATTCAACCACTTTAGGGATTGGGGAGGAAAAGCACCCTCCTTCTGTAATTGTCAAGAAGATACTGGTGGGAAACAAGGCTGACATCGGTGAAAGCAAAAGGGCAGTGACGAAATCTAGAGGTCAGGCTCTTGCTGATGAGTTCGGCCTCAAGTTCTTCGAAACCAGTGCAAAGACGAACATGAATGTGGAAGGGGTTTTCCTTGCGTTAGCCAGGGATATCAGGCCAGAATTGAACGCTTCTAGGAGCATTCACGAGCGTGCGGCACTTGGGATCAACCGATTAGCTGCACAGAGGTCATCTTGCTGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

111

Amino Acids

12.03

Weight (kDa)

9.62

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 25 - 82 6.8e-15 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020582)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0285671
rosa_multiflora Rmu_sc0001989.1_g000010
rosa_roxburghii Rroxscaffold_7G00182840
rosa_samantha Rh6BG289600 Rh6CG290600 Rh6DG283300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 284, 330
AclWI GGATC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 27, 256
AjnI CCWGG 1 cut(s) 233
AleI CACNNNNGTG 1 cut(s) 279
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
AlwI GGATC 1 cut(s) 302
AoxI GGCC 2 cut(s) 166, 245
ApeKI GCWGC 2 cut(s) 308, 327
AsuHPI GGTGA 1 cut(s) 122
AsuII TTCGAA 1 cut(s) 180
BauI CACGAG 1 cut(s) 275
BbvI GCAGC 2 cut(s) 295, 314
BccI CCATC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 235
BfaI CTAG 2 cut(s) 138, 264
BisI GCNGC 3 cut(s) 285, 309, 328
BlsI GCNGC 3 cut(s) 286, 310, 329
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 90, 186
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 36
BseNI ACTGG 2 cut(s) 90, 186
BseXI GCAGC 2 cut(s) 295, 314
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 2 cut(s) 168, 247
BslI CCNNNNNNNGG 1 cut(s) 36
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 2 cut(s) 168, 247
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 2 cut(s) 284, 330
BspANI GGCC 2 cut(s) 168, 247
BspPI GGATC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 90, 186
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 282
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 295, 314
BsuRI GGCC 2 cut(s) 168, 247
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 193
Cac8I GCNNGC 1 cut(s) 282
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 18, 101, 149, 168, 233, 247, 308
CviKI_1 RGCY 7 cut(s) 18, 101, 149, 168, 233, 247, 308
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eco32I GATATC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 241
FaeI CATG 1 cut(s) 205
FaiI YATR 1 cut(s) 203
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 285, 309, 328
Fsp4HI GCNGC 3 cut(s) 285, 309, 328
FspBI CTAG 2 cut(s) 138, 264
GluI GCNGC 3 cut(s) 285, 309, 328
HaeIII GGCC 2 cut(s) 168, 247
Hin1II CATG 1 cut(s) 205
HphI GGTGA 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 76, 138, 275
HpyAV CCTTC 2 cut(s) 72, 206
HpyCH4V TGCA 2 cut(s) 191, 311
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 7 cut(s) 71, 131, 199, 220, 229, 247, 261
Lsp1109I GCAGC 2 cut(s) 295, 314
MaeI CTAG 2 cut(s) 138, 264
MaeIII GTNAC 2 cut(s) 6, 127
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 2 cut(s) 91, 169
MluCI AATT 2 cut(s) 69, 251
MnlI CCTC 5 cut(s) 40, 69, 134, 179, 309
MseI TTAA 1 cut(s) 334
MslI CAYNNNNRTG 2 cut(s) 206, 279
MspR9I CCNGG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 1 cut(s) 235
NdeII GATC 1 cut(s) 294
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 127
NspV TTCGAA 1 cut(s) 180
OliI CACNNNNGTG 1 cut(s) 279
PctI GAATGC 1 cut(s) 270
PkrI GCNGC 3 cut(s) 286, 310, 329
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
RseI CAYNNNNRTG 2 cut(s) 206, 279
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 3 cut(s) 285, 309, 328
Sau3AI GATC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 235
SetI ASST 3 cut(s) 145, 310, 320
SfuI TTCGAA 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 206, 279
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 69, 251
SsiI CCGC 2 cut(s) 284, 330
SspMI CTAG 2 cut(s) 138, 264
StyD4I CCNGG 1 cut(s) 233
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 69, 251
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TscAI CASTG 2 cut(s) 132, 193
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 308, 327
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 2 cut(s) 132, 193
XbaI TCTAGA 1 cut(s) 137
XspI CTAG 2 cut(s) 138, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.