Rmu_sc0001989.1_g000010

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001989.1
Physical Location & Seq
Reverse (-)
31844 .. 32167
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001989.1_g000010.1.cds

Sequence Viewer

Length: 324 bp
atgagtcatcattcaaccactttagggattggggaggaaaagcaacctccttctgtaaatgtcaagaagatactggtgggaaacaaggctgacatcggtgagagcaaaagggtagtgacgaaatctagaggtcaggctcttgctgatgagttctgcctcaagttctttgaaaccattgcaaagacgaacatgaatgtggaaggggttttccttgcgttagccagggatatcaggccagaattgaacgcttctaggagcattcacgagcttccggcagttgggatcaaccgattagcagcacagaggtcatcttgctgcggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.6

Weight (kDa)

9.22

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020582)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0285671
rosa_multiflora Rmu_sc0001989.1_g000010
rosa_roxburghii Rroxscaffold_7G00182840
rosa_samantha Rh6BG289600 Rh6CG290600 Rh6DG283300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 318
AclWI GGATC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 24, 278
AgsI TTSAA 3 cut(s) 15, 170, 244
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
AlwI GGATC 1 cut(s) 290
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 296, 315
AsuHPI GGTGA 1 cut(s) 110
BauI CACGAG 1 cut(s) 263
BbvI GCAGC 2 cut(s) 302, 308
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 2 cut(s) 126, 252
BisI GCNGC 2 cut(s) 297, 316
BlsI GCNGC 2 cut(s) 298, 317
Bme1390I CCNGG 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 278
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 24, 278
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 302, 308
BshFI GGCC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 24, 278
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 1 cut(s) 318
BspANI GGCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 223
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 302, 308
BsuRI GGCC 1 cut(s) 235
CviAII CATG 1 cut(s) 190
CviJI RGCY 5 cut(s) 89, 137, 221, 235, 268
CviKI_1 RGCY 5 cut(s) 89, 137, 221, 235, 268
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eco32I GATATC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 221
EcoRV GATATC 1 cut(s) 229
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 297, 316
Fsp4HI GCNGC 2 cut(s) 297, 316
FspBI CTAG 2 cut(s) 126, 252
GluI GCNGC 2 cut(s) 297, 316
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 272
Hin1II CATG 1 cut(s) 193
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 64, 126, 263
HpyAV CCTTC 2 cut(s) 60, 194
HpyCH4V TGCA 1 cut(s) 179
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 7 cut(s) 59, 119, 208, 217, 235, 249, 285
Lsp1109I GCAGC 2 cut(s) 302, 308
MaeI CTAG 2 cut(s) 126, 252
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 1 cut(s) 79
MluCI AATT 1 cut(s) 239
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 28, 57, 122, 167, 297
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 1 cut(s) 223
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 115
PctI GAATGC 1 cut(s) 258
PkrI GCNGC 2 cut(s) 298, 317
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 2 cut(s) 297, 316
Sau3AI GATC 1 cut(s) 282
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 223
SetI ASST 4 cut(s) 49, 133, 270, 308
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 318
SspMI CTAG 2 cut(s) 126, 252
StyD4I CCNGG 1 cut(s) 221
TasI AATT 1 cut(s) 239
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 296, 315
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 125
XspI CTAG 2 cut(s) 126, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.