RchiOBHm_Chr6g0287781

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019955
Physical Location & Seq
Reverse (-)
51061846 .. 51062616
771 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 771 bp
ATGGAGTTGACAACAGTCCTCTGCTTCCTCTTCTTCTTCATCATCCACACCATCACAGCCTCACCATCACCTCTCCTCCCAAAACAAGCCCTCCCCACCAAGTCAGGCTACCTCCCAGTCAACCCCACCACATCCTCTGCAATATTCTACACCTTCTATGAAGCCCAGAACCCAACTTCACCTCTCTCCCAAACCCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCAGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGAGTTCAGTATAGCTTCCACACCCAAAGAGATTCCGAGAAACCAGTTTGCGGTGGCACAACACCTGTTCGCTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCGAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTTGGTACTACATTTTGCAGAAGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGAGGTAAAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATAG

Protein Analysis

256

Amino Acids

28.47

Weight (kDa)

6.07

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 31 - 245 3.2e-65 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019955)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0287781
rosa_samantha Rh6BG307600 Rh6CG302000 Rh6CG302100 Rh6CG315500 Rh6DG299600 Rh6DG299900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 330
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 219, 337, 428
AclWI GGATC 3 cut(s) 293, 470, 646
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 3 cut(s) 310, 330, 427
AgsI TTSAA 1 cut(s) 734
AjnI CCWGG 3 cut(s) 213, 266, 329
AluBI AGCT 7 cut(s) 259, 392, 472, 519, 614, 730, 761
AluI AGCT 7 cut(s) 259, 392, 472, 519, 614, 730, 761
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 3 cut(s) 293, 470, 646
AlwNI CAGNNNCTG 1 cut(s) 330
AoxI GGCC 2 cut(s) 220, 494
ApeKI GCWGC 2 cut(s) 228, 449
ApoI RAATTY 1 cut(s) 607
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 3 cut(s) 221, 263, 591
AsuC2I CCSGG 2 cut(s) 225, 647
AsuHPI GGTGA 5 cut(s) 54, 60, 171, 298, 661
AvaII GGWCC 2 cut(s) 263, 591
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 215, 436
BccI CCATC 3 cut(s) 59, 73, 377
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 3 cut(s) 215, 268, 331
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 2 cut(s) 225, 647
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 3 cut(s) 220, 229, 450
BlsI GCNGC 3 cut(s) 221, 230, 451
Bme1390I CCNGG 5 cut(s) 215, 225, 268, 331, 647
Bme18I GGWCC 2 cut(s) 263, 591
BmgT120I GGNCC 3 cut(s) 221, 263, 591
BmiI GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
BmrFI CCNGG 5 cut(s) 215, 225, 268, 331, 647
BmrI ACTGGG 2 cut(s) 110, 519
BmsI GCATC 2 cut(s) 348, 565
BmuI ACTGGG 2 cut(s) 110, 519
BoxI GACNNNNGTC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 197, 307
BpuMI CCSGG 2 cut(s) 225, 647
BsaJI CCNNGG 5 cut(s) 214, 223, 237, 266, 309
BsaXI ACNNNNNCTCC 4 cut(s) 60, 75, 90, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 330, 427
Bse1I ACTGG 4 cut(s) 116, 324, 421, 514
BseBI CCWGG 3 cut(s) 215, 268, 331
BseDI CCNNGG 5 cut(s) 214, 223, 237, 266, 309
BseGI GGATG 2 cut(s) 42, 131
BseLI CCNNNNNNNGG 3 cut(s) 310, 330, 427
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 4 cut(s) 116, 324, 421, 514
BseRI GAGGAG 3 cut(s) 65, 191, 223
BseXI GCAGC 2 cut(s) 215, 436
BseYI CCCAGC 2 cut(s) 614, 761
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 222, 496
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 3 cut(s) 225, 539, 647
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 310, 330, 427
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 222, 496
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 5 cut(s) 298, 475, 595, 651, 696
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 3 cut(s) 219, 337, 428
BspANI GGCC 2 cut(s) 222, 496
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
BspPI GGATC 3 cut(s) 293, 470, 646
BsrI ACTGG 4 cut(s) 116, 324, 421, 514
BssECI CCNNGG 5 cut(s) 214, 223, 237, 266, 309
BssMI GATC 5 cut(s) 298, 475, 595, 651, 696
BssT1I CCWWGG 2 cut(s) 237, 309
Bst2UI CCWGG 3 cut(s) 215, 268, 331
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 35, 707
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 42, 131
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 301, 478, 598, 654, 699
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 5 cut(s) 298, 475, 595, 651, 696
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 6 cut(s) 225, 228, 345, 525, 620, 677
BstNI CCWGG 3 cut(s) 215, 268, 331
BstNSI RCATGY 1 cut(s) 605
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 5 cut(s) 213, 223, 266, 329, 645
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 215, 436
BsuRI GGCC 2 cut(s) 222, 496
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 42, 131
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 507, 750
Cac8I GCNNGC 1 cut(s) 526
CaiI CAGNNNCTG 1 cut(s) 330
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 221, 263, 591
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 550
CviAII CATG 3 cut(s) 238, 602, 668
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 579
DpnI GATC 5 cut(s) 300, 477, 597, 653, 698
DpnII GATC 5 cut(s) 298, 475, 595, 651, 696
Eam1104I CTCTTC 2 cut(s) 35, 707
EarI CTCTTC 2 cut(s) 35, 707
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 237, 309
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 263, 591
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 213, 266, 329
EcoT14I CCWWGG 2 cut(s) 237, 309
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 237, 309
FaeI CATG 3 cut(s) 241, 605, 671
FaiI YATR 8 cut(s) 159, 239, 389, 522, 534, 603, 626, 669
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 237, 601, 667
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 220, 229, 450
FokI GGATG 2 cut(s) 29, 118
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 3 cut(s) 220, 229, 450
FspBI CTAG 1 cut(s) 756
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 220, 229, 450
GsaI CCCAGC 2 cut(s) 618, 765
GsuI CTGGAG 2 cut(s) 197, 307
HaeIII GGCC 2 cut(s) 222, 496
HapII CCGG 3 cut(s) 225, 539, 647
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 241, 605, 671
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 2 cut(s) 9, 121
HindII GTYRAC 2 cut(s) 9, 121
HinfI GANTC 1 cut(s) 409
HpaII CCGG 3 cut(s) 225, 539, 647
HphI GGTGA 5 cut(s) 54, 60, 171, 298, 661
Hpy166II GTNNAC 3 cut(s) 9, 121, 502
Hpy188I TCNGA 4 cut(s) 298, 374, 414, 595
Hpy188III TCNNGA 2 cut(s) 359, 756
Hpy8I GTNNAC 3 cut(s) 9, 121, 502
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 140, 452, 524, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 225, 228, 345, 525, 620, 677
HpyF3I CTNAG 1 cut(s) 579
Hsp92II CATG 3 cut(s) 241, 605, 671
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 5 cut(s) 298, 475, 595, 651, 696
LmnI GCTCC 3 cut(s) 216, 236, 727
Lsp1109I GCAGC 2 cut(s) 215, 436
LweI GCATC 2 cut(s) 348, 565
MaeI CTAG 1 cut(s) 756
MalI GATC 5 cut(s) 300, 477, 597, 653, 698
MboI GATC 5 cut(s) 298, 475, 595, 651, 696
MboII GAAGA 7 cut(s) 22, 25, 28, 244, 334, 577, 724
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 5 cut(s) 277, 453, 543, 607, 734
MspI CCGG 3 cut(s) 225, 539, 647
MspR9I CCNGG 5 cut(s) 215, 225, 268, 331, 647
MvaI CCWGG 3 cut(s) 215, 268, 331
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 6 cut(s) 225, 228, 345, 525, 620, 677
NciI CCSGG 2 cut(s) 225, 647
NcoI CCATGG 1 cut(s) 237
NdeII GATC 5 cut(s) 298, 475, 595, 651, 696
NlaIII CATG 3 cut(s) 241, 605, 671
NlaIV GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
NspI RCATGY 1 cut(s) 605
PceI AGGCCT 1 cut(s) 496
PfeI GAWTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 330
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 3 cut(s) 221, 230, 451
Ple19I CGATCG 1 cut(s) 598
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 213, 266, 329
PspFI CCCAGC 2 cut(s) 614, 761
PspGI CCWGG 3 cut(s) 213, 266, 329
PspN4I GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
PspPI GGNCC 3 cut(s) 221, 263, 591
PstNI CAGNNNCTG 1 cut(s) 330
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SacI GAGCTC 1 cut(s) 261
SatI GCNGC 3 cut(s) 220, 229, 450
Sau3AI GATC 5 cut(s) 298, 475, 595, 651, 696
Sau96I GGNCC 3 cut(s) 221, 263, 591
ScrFI CCNGG 5 cut(s) 215, 225, 268, 331, 647
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 2 cut(s) 348, 565
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 2 cut(s) 263, 591
Sse9I AATT 5 cut(s) 277, 453, 543, 607, 734
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 3 cut(s) 219, 337, 428
SspI AATATT 2 cut(s) 144, 571
SspMI CTAG 1 cut(s) 756
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 5 cut(s) 213, 223, 266, 329, 645
StyI CCWWGG 2 cut(s) 237, 309
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 255, 360, 491
TaqII GACCGA 1 cut(s) 251
TasI AATT 5 cut(s) 277, 453, 543, 607, 734
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 409
TscAI CASTG 2 cut(s) 514, 750
TseI GCWGC 2 cut(s) 228, 449
TspDTI ATGAA 3 cut(s) 28, 174, 454
TspRI CASTG 2 cut(s) 514, 750
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 263, 591
XapI RAATTY 1 cut(s) 607
XbaI TCTAGA 1 cut(s) 755
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.