RchiOBHm_Chr6g0287781

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019955
Physical Location & Seq
Reverse (-)
51061846 .. 51062616
771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25818

Sequence Viewer

Length: 771 bp
ATGGAGTTGACAACAGTCCTCTGCTTCCTCTTCTTCTTCATCATCCACACCATCACAGCCTCACCATCACCTCTCCTCCCAAAACAAGCCCTCCCCACCAAGTCAGGCTACCTCCCAGTCAACCCCACCACATCCTCTGCAATATTCTACACCTTCTATGAAGCCCAGAACCCAACTTCACCTCTCTCCCAAACCCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCAGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGAGTTCAGTATAGCTTCCACACCCAAAGAGATTCCGAGAAACCAGTTTGCGGTGGCACAACACCTGTTCGCTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCGAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTTGGTACTACATTTTGCAGAAGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGAGGTAAAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATAG

Protein Analysis

256

Amino Acids

28.47

Weight (kDa)

6.07

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 31 - 245 3.2e-65 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019955)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0287781
rosa_samantha Rh6BG307600 Rh6CG302000 Rh6CG302100 Rh6CG315500 Rh6DG299600 Rh6DG299900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 330
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 219, 337, 428
AclWI GGATC 3 cut(s) 293, 470, 646
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 3 cut(s) 310, 330, 427
AgsI TTSAA 1 cut(s) 734
AjnI CCWGG 3 cut(s) 213, 266, 329
AluBI AGCT 7 cut(s) 259, 392, 472, 519, 614, 730, 761
AluI AGCT 7 cut(s) 259, 392, 472, 519, 614, 730, 761
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 3 cut(s) 293, 470, 646
AlwNI CAGNNNCTG 1 cut(s) 330
AoxI GGCC 2 cut(s) 220, 494
ApeKI GCWGC 2 cut(s) 228, 449
ApoI RAATTY 1 cut(s) 607
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 3 cut(s) 221, 263, 591
AsuC2I CCSGG 2 cut(s) 225, 647
AsuHPI GGTGA 5 cut(s) 54, 60, 171, 298, 661
AvaII GGWCC 2 cut(s) 263, 591
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 215, 436
BccI CCATC 3 cut(s) 59, 73, 377
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 3 cut(s) 215, 268, 331
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 2 cut(s) 225, 647
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 3 cut(s) 220, 229, 450
BlsI GCNGC 3 cut(s) 221, 230, 451
Bme1390I CCNGG 5 cut(s) 215, 225, 268, 331, 647
Bme18I GGWCC 2 cut(s) 263, 591
BmgT120I GGNCC 3 cut(s) 221, 263, 591
BmiI GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
BmrFI CCNGG 5 cut(s) 215, 225, 268, 331, 647
BmrI ACTGGG 2 cut(s) 110, 519
BmsI GCATC 2 cut(s) 348, 565
BmuI ACTGGG 2 cut(s) 110, 519
BoxI GACNNNNGTC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 197, 307
BpuMI CCSGG 2 cut(s) 225, 647
BsaJI CCNNGG 5 cut(s) 214, 223, 237, 266, 309
BsaXI ACNNNNNCTCC 4 cut(s) 60, 75, 90, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 330, 427
Bse1I ACTGG 4 cut(s) 116, 324, 421, 514
BseBI CCWGG 3 cut(s) 215, 268, 331
BseDI CCNNGG 5 cut(s) 214, 223, 237, 266, 309
BseGI GGATG 2 cut(s) 42, 131
BseLI CCNNNNNNNGG 3 cut(s) 310, 330, 427
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 4 cut(s) 116, 324, 421, 514
BseRI GAGGAG 3 cut(s) 65, 191, 223
BseXI GCAGC 2 cut(s) 215, 436
BseYI CCCAGC 2 cut(s) 614, 761
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 222, 496
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 3 cut(s) 225, 539, 647
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 310, 330, 427
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 222, 496
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 5 cut(s) 298, 475, 595, 651, 696
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 3 cut(s) 219, 337, 428
BspANI GGCC 2 cut(s) 222, 496
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
BspPI GGATC 3 cut(s) 293, 470, 646
BsrI ACTGG 4 cut(s) 116, 324, 421, 514
BssECI CCNNGG 5 cut(s) 214, 223, 237, 266, 309
BssMI GATC 5 cut(s) 298, 475, 595, 651, 696
BssT1I CCWWGG 2 cut(s) 237, 309
Bst2UI CCWGG 3 cut(s) 215, 268, 331
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 35, 707
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 42, 131
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 301, 478, 598, 654, 699
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 5 cut(s) 298, 475, 595, 651, 696
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 6 cut(s) 225, 228, 345, 525, 620, 677
BstNI CCWGG 3 cut(s) 215, 268, 331
BstNSI RCATGY 1 cut(s) 605
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 5 cut(s) 213, 223, 266, 329, 645
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 215, 436
BsuRI GGCC 2 cut(s) 222, 496
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 42, 131
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 507, 750
Cac8I GCNNGC 1 cut(s) 526
CaiI CAGNNNCTG 1 cut(s) 330
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 221, 263, 591
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 550
CviAII CATG 3 cut(s) 238, 602, 668
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 579
DpnI GATC 5 cut(s) 300, 477, 597, 653, 698
DpnII GATC 5 cut(s) 298, 475, 595, 651, 696
Eam1104I CTCTTC 2 cut(s) 35, 707
EarI CTCTTC 2 cut(s) 35, 707
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 237, 309
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 263, 591
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 213, 266, 329
EcoT14I CCWWGG 2 cut(s) 237, 309
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 237, 309
FaeI CATG 3 cut(s) 241, 605, 671
FaiI YATR 8 cut(s) 159, 239, 389, 522, 534, 603, 626, 669
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 237, 601, 667
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 220, 229, 450
FokI GGATG 2 cut(s) 29, 118
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 3 cut(s) 220, 229, 450
FspBI CTAG 1 cut(s) 756
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 220, 229, 450
GsaI CCCAGC 2 cut(s) 618, 765
GsuI CTGGAG 2 cut(s) 197, 307
HaeIII GGCC 2 cut(s) 222, 496
HapII CCGG 3 cut(s) 225, 539, 647
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 241, 605, 671
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 2 cut(s) 9, 121
HindII GTYRAC 2 cut(s) 9, 121
HinfI GANTC 1 cut(s) 409
HpaII CCGG 3 cut(s) 225, 539, 647
HphI GGTGA 5 cut(s) 54, 60, 171, 298, 661
Hpy166II GTNNAC 3 cut(s) 9, 121, 502
Hpy188I TCNGA 4 cut(s) 298, 374, 414, 595
Hpy188III TCNNGA 2 cut(s) 359, 756
Hpy8I GTNNAC 3 cut(s) 9, 121, 502
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 140, 452, 524, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 225, 228, 345, 525, 620, 677
HpyF3I CTNAG 1 cut(s) 579
Hsp92II CATG 3 cut(s) 241, 605, 671
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 5 cut(s) 298, 475, 595, 651, 696
LmnI GCTCC 3 cut(s) 216, 236, 727
Lsp1109I GCAGC 2 cut(s) 215, 436
LweI GCATC 2 cut(s) 348, 565
MaeI CTAG 1 cut(s) 756
MalI GATC 5 cut(s) 300, 477, 597, 653, 698
MboI GATC 5 cut(s) 298, 475, 595, 651, 696
MboII GAAGA 7 cut(s) 22, 25, 28, 244, 334, 577, 724
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 5 cut(s) 277, 453, 543, 607, 734
MspI CCGG 3 cut(s) 225, 539, 647
MspR9I CCNGG 5 cut(s) 215, 225, 268, 331, 647
MvaI CCWGG 3 cut(s) 215, 268, 331
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 6 cut(s) 225, 228, 345, 525, 620, 677
NciI CCSGG 2 cut(s) 225, 647
NcoI CCATGG 1 cut(s) 237
NdeII GATC 5 cut(s) 298, 475, 595, 651, 696
NlaIII CATG 3 cut(s) 241, 605, 671
NlaIV GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
NspI RCATGY 1 cut(s) 605
PceI AGGCCT 1 cut(s) 496
PfeI GAWTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 330
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 3 cut(s) 221, 230, 451
Ple19I CGATCG 1 cut(s) 598
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 213, 266, 329
PspFI CCCAGC 2 cut(s) 614, 761
PspGI CCWGG 3 cut(s) 213, 266, 329
PspN4I GGNNCC 7 cut(s) 212, 223, 265, 315, 335, 376, 592
PspPI GGNCC 3 cut(s) 221, 263, 591
PstNI CAGNNNCTG 1 cut(s) 330
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SacI GAGCTC 1 cut(s) 261
SatI GCNGC 3 cut(s) 220, 229, 450
Sau3AI GATC 5 cut(s) 298, 475, 595, 651, 696
Sau96I GGNCC 3 cut(s) 221, 263, 591
ScrFI CCNGG 5 cut(s) 215, 225, 268, 331, 647
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 2 cut(s) 348, 565
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 2 cut(s) 263, 591
Sse9I AATT 5 cut(s) 277, 453, 543, 607, 734
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 3 cut(s) 219, 337, 428
SspI AATATT 2 cut(s) 144, 571
SspMI CTAG 1 cut(s) 756
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 5 cut(s) 213, 223, 266, 329, 645
StyI CCWWGG 2 cut(s) 237, 309
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 3 cut(s) 255, 360, 491
TaqII GACCGA 1 cut(s) 251
TasI AATT 5 cut(s) 277, 453, 543, 607, 734
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 409
TscAI CASTG 2 cut(s) 514, 750
TseI GCWGC 2 cut(s) 228, 449
TspDTI ATGAA 3 cut(s) 28, 174, 454
TspRI CASTG 2 cut(s) 514, 750
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 263, 591
XapI RAATTY 1 cut(s) 607
XbaI TCTAGA 1 cut(s) 755
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.