Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019955

Physical Location & Seq

Genomic Coordinates Reverse (-)

53672081 .. 53672785

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGTGCGTTAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCGGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGGGTTCAGTATAGCTTCCACACCCGAAGAGATTCCGAGAAACCAGTTTGCGGTTGCACAACACCTGTTCGCTGCAATCACCGAGTTCATTGAGCTTGATCCTGTGTTTAAGTTTAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTGGGTACTACATTTTGCAGAGGAATATTGATGCTGAGAGTTCTAGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGACGTAGAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATGGAGCGAGGCGAAAATTGCAAGGAGCAGAGTGTTGGATAGGTTGCAAGACATGACCGGGTTGCCCACTTTGTATGATATCAGAAGGAATGCTAGCTATGAAACGCATTTGGTTGGGGAGTTATTGAGGAATGAGGAGGTGAGGAAGGCTTTGGGGTGTCGAATGAGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

234

Amino Acids

26.36

Weight (kDa)

5.9

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 208	5.4e-45	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019955)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0287781
rosa_samantha	Rh6BG307600 Rh6CG302000 Rh6CG302100 Rh6CG315500 Rh6DG299600 Rh6DG299900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	100, 191
AclWI	GGATC	3 cut(s)	56, 233, 409
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
AgsI	TTSAA	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	29, 92
AluBI	AGCT	8 cut(s)	22, 155, 235, 282, 377, 493, 524, 627
AluI	AGCT	8 cut(s)	22, 155, 235, 282, 377, 493, 524, 627
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	3 cut(s)	56, 233, 409
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	26, 354
AsuC2I	CCSGG	3 cut(s)	142, 410, 589
AsuHPI	GGTGA	4 cut(s)	61, 211, 424, 682
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	26, 354
BanII	GRGCYC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	31, 94
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	3 cut(s)	142, 410, 589
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	3 cut(s)	351, 519, 624
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	5 cut(s)	31, 94, 142, 410, 589
Bme18I	GGWCC	2 cut(s)	26, 354
BmgT120I	GGNCC	2 cut(s)	26, 354
BmiI	GGNNCC	5 cut(s)	28, 78, 91, 98, 139
BmrFI	CCNGG	5 cut(s)	31, 94, 142, 410, 589
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	111, 328
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	1 cut(s)	282
BpuMI	CCSGG	3 cut(s)	142, 410, 589
BsaJI	CCNNGG	2 cut(s)	29, 72
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
Bse1I	ACTGG	2 cut(s)	184, 277
BseBI	CCWGG	2 cut(s)	31, 94
BseDI	CCNNGG	2 cut(s)	29, 72
BseLI	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	184, 277
BseRI	GAGGAG	2 cut(s)	503, 680
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	2 cut(s)	377, 524
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	5 cut(s)	87, 141, 302, 410, 588
BslFI	GGGAC	2 cut(s)	12, 494
BslI	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	12, 494
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	5 cut(s)	61, 238, 358, 414, 459
BspACI	CCGC	2 cut(s)	100, 191
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	5 cut(s)	28, 78, 91, 98, 139
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	56, 233, 409
BsrI	ACTGG	2 cut(s)	184, 277
BssECI	CCNNGG	2 cut(s)	29, 72
BssMI	GATC	5 cut(s)	61, 238, 358, 414, 459
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	31, 94
Bst6I	CTCTTC	2 cut(s)	162, 470
BstC8I	GCNNGC	2 cut(s)	289, 625
BstDEI	CTNAG	1 cut(s)	342
BstKTI	GATC	5 cut(s)	64, 241, 361, 417, 462
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	61, 238, 358, 414, 459
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 288, 383, 440, 548
BstNI	CCWGG	2 cut(s)	31, 94
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	5 cut(s)	29, 92, 140, 408, 587
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	270, 513
Cac8I	GCNNGC	2 cut(s)	289, 625
Cfr13I	GGNCC	2 cut(s)	26, 354
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	365, 431, 583
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	5 cut(s)	63, 240, 360, 416, 461
DpnII	GATC	5 cut(s)	61, 238, 358, 414, 459
Eam1104I	CTCTTC	2 cut(s)	162, 470
EarI	CTCTTC	2 cut(s)	162, 470
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	26, 354
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	29, 92
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	368, 434, 586
FaqI	GGGAC	2 cut(s)	12, 494
FatI	CATG	3 cut(s)	364, 430, 582
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	3 cut(s)	351, 519, 624
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	2 cut(s)	381, 528
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	5 cut(s)	87, 141, 302, 410, 588
Hin1II	CATG	3 cut(s)	368, 434, 586
HinfI	GANTC	2 cut(s)	172, 697
HpaII	CCGG	5 cut(s)	87, 141, 302, 410, 588
HphI	GGTGA	4 cut(s)	61, 211, 424, 682
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	61, 137, 177, 358, 614
Hpy188III	TCNNGA	2 cut(s)	122, 519
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	609, 670
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	197, 215, 287, 325, 551, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 288, 383, 440, 548
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	368, 434, 586
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	61, 238, 358, 414, 459
LmnI	GCTCC	3 cut(s)	490, 534, 555
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	2 cut(s)	111, 328
MaeI	CTAG	3 cut(s)	351, 519, 624
MaeII	ACGT	1 cut(s)	483
MalI	GATC	5 cut(s)	63, 240, 360, 416, 461
MboI	GATC	5 cut(s)	61, 238, 358, 414, 459
MboII	GAAGA	4 cut(s)	7, 97, 179, 487
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	5 cut(s)	40, 306, 370, 497, 546
MmeI	TCCRAC	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	39, 249
MspI	CCGG	5 cut(s)	87, 141, 302, 410, 588
MspR9I	CCNGG	5 cut(s)	31, 94, 142, 410, 589
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	31, 94
MwoI	GCNNNNNNNGC	5 cut(s)	108, 288, 383, 440, 548
NciI	CCSGG	3 cut(s)	142, 410, 589
NdeII	GATC	5 cut(s)	61, 238, 358, 414, 459
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	3 cut(s)	368, 434, 586
NlaIV	GGNNCC	5 cut(s)	28, 78, 91, 98, 139
NspI	RCATGY	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	29, 92
PspFI	CCCAGC	2 cut(s)	377, 524
PspGI	CCWGG	2 cut(s)	29, 92
PspN4I	GGNNCC	5 cut(s)	28, 78, 91, 98, 139
PspPI	GGNCC	2 cut(s)	26, 354
PvuI	CGATCG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	39, 249
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	61, 238, 358, 414, 459
Sau96I	GGNCC	2 cut(s)	26, 354
ScrFI	CCNGG	5 cut(s)	31, 94, 142, 410, 589
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	111, 328
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	26, 354
Sse9I	AATT	5 cut(s)	40, 306, 370, 497, 546
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	100, 191
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	3 cut(s)	351, 519, 624
SstI	GAGCTC	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	5 cut(s)	29, 92, 140, 408, 587
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	18, 123, 691
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	5 cut(s)	40, 306, 370, 497, 546
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	39, 249
Tru9I	TTAA	2 cut(s)	39, 249
TscAI	CASTG	2 cut(s)	277, 513
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	217, 645
TspRI	CASTG	2 cut(s)	277, 513
VpaK11BI	GGWCC	2 cut(s)	26, 354
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	3 cut(s)	351, 519, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.