Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019955

Physical Location & Seq

Genomic Coordinates Reverse (-)

50069669 .. 50070169

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCGGTTCCTGGAATCGCATCTTCGGCTTGGTTTTTCTTGACAATCCCATCGGAACCGGGTTCAGTATAGCTTCCACACCCGAAGAGATTCCGAGAAACCAGTTTGCGGTGGCACAACACCTGTTCACTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCAAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTGGGTACTACATTTTGCAGAGGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGATCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCAGGTTTGATCAATGCGGCAGAAGAGGGAGGTAGAGGAGCTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

166

Amino Acids

18.12

Weight (kDa)

5.26

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 157	3.4e-44	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019955)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0287781
rosa_samantha	Rh6BG307600 Rh6CG302000 Rh6CG302100 Rh6CG315500 Rh6DG299600 Rh6DG299900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	191, 467
AclWI	GGATC	4 cut(s)	56, 233, 401, 409
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
AgsI	TTSAA	1 cut(s)	495
AjnI	CCWGG	2 cut(s)	29, 92
AluBI	AGCT	6 cut(s)	22, 155, 235, 282, 377, 491
AluI	AGCT	6 cut(s)	22, 155, 235, 282, 377, 491
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	4 cut(s)	56, 233, 401, 409
AoxI	GGCC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	26, 354
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	61, 424
AvaII	GGWCC	2 cut(s)	26, 354
BanII	GRGCYC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	31, 94
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	31, 94, 142
Bme18I	GGWCC	2 cut(s)	26, 354
BmgT120I	GGNCC	2 cut(s)	26, 354
BmiI	GGNNCC	5 cut(s)	28, 78, 91, 139, 355
BmrFI	CCNGG	3 cut(s)	31, 94, 142
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	111, 328
BmuI	ACTGGG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	29, 72
BsaWI	WCCGGW	2 cut(s)	86, 409
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
Bse1I	ACTGG	2 cut(s)	184, 277
BseBI	CCWGG	2 cut(s)	31, 94
BseDI	CCNNGG	2 cut(s)	29, 72
BseLI	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	184, 277
BseRI	GAGGAG	1 cut(s)	501
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	87, 141, 302, 410
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	5 cut(s)	73, 86, 93, 190, 308
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
BspACI	CCGC	2 cut(s)	191, 467
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	5 cut(s)	28, 78, 91, 139, 355
BspPI	GGATC	4 cut(s)	56, 233, 401, 409
BsrI	ACTGG	2 cut(s)	184, 277
BssECI	CCNNGG	2 cut(s)	29, 72
BssMI	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	31, 94
Bst6I	CTCTTC	2 cut(s)	162, 468
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	6 cut(s)	64, 241, 361, 409, 417, 462
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 288, 383, 440
BstNI	CCWGG	2 cut(s)	31, 94
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	29, 92, 140
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 270
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	26, 354
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	365, 431
CviJI	RGCY	8 cut(s)	22, 111, 155, 235, 259, 282, 377, 491
CviKI_1	RGCY	8 cut(s)	22, 111, 155, 235, 259, 282, 377, 491
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	6 cut(s)	63, 240, 360, 408, 416, 461
DpnII	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
Eam1104I	CTCTTC	2 cut(s)	162, 468
EarI	CTCTTC	2 cut(s)	162, 468
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	26, 354
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	29, 92
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	368, 434
FaiI	YATR	6 cut(s)	152, 285, 297, 366, 389, 432
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	364, 430
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	468
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	468
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	4 cut(s)	87, 141, 302, 410
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	368, 434
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	97, 172
HpaII	CCGG	4 cut(s)	87, 141, 302, 410
HphI	GGTGA	2 cut(s)	61, 424
Hpy166II	GTNNAC	2 cut(s)	210, 265
Hpy188I	TCNGA	4 cut(s)	61, 137, 177, 358
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	210, 265
HpyCH4V	TGCA	3 cut(s)	215, 287, 325
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 288, 383, 440
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	368, 434
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
LmnI	GCTCC	1 cut(s)	488
LweI	GCATC	2 cut(s)	111, 328
MalI	GATC	6 cut(s)	63, 240, 360, 408, 416, 461
MboI	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
MboII	GAAGA	4 cut(s)	7, 97, 179, 485
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	5 cut(s)	40, 216, 306, 370, 495
MnlI	CCTC	6 cut(s)	67, 77, 321, 469, 473, 479
MroXI	GAANNNNTTC	1 cut(s)	171
MspI	CCGG	4 cut(s)	87, 141, 302, 410
MspR9I	CCNGG	3 cut(s)	31, 94, 142
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	31, 94
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	108, 288, 383, 440
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
NlaIII	CATG	2 cut(s)	368, 434
NlaIV	GGNNCC	5 cut(s)	28, 78, 91, 139, 355
NspI	RCATGY	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	97, 172
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	469
Ple19I	CGATCG	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	29, 92
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	29, 92
PspN4I	GGNNCC	5 cut(s)	28, 78, 91, 139, 355
PspPI	GGNCC	2 cut(s)	26, 354
PsuI	RGATCY	1 cut(s)	406
PvuI	CGATCG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SacI	GAGCTC	1 cut(s)	24
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	6 cut(s)	61, 238, 358, 406, 414, 459
Sau96I	GGNCC	2 cut(s)	26, 354
ScrFI	CCNGG	3 cut(s)	31, 94, 142
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	111, 328
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	26, 354
Sse9I	AATT	5 cut(s)	40, 216, 306, 370, 495
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	191, 467
SspI	AATATT	1 cut(s)	334
SstI	GAGCTC	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	29, 92, 140
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	5 cut(s)	40, 216, 306, 370, 495
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	97, 172
TscAI	CASTG	2 cut(s)	217, 277
TspDTI	ATGAA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	217, 277
VpaK11BI	GGWCC	2 cut(s)	26, 354
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.