RchiOBHm_Chr6g0293501

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025076
Physical Location & Seq
Reverse (-)
56172540 .. 56176856
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGACACTGCCTTTGTGTCTTACTAAATGGTCTAATTCTGTTTCTTTGCTAAAACAAATTAATGACTTCCTTTTCATATGTGTAAAAGATAGAGGGAAGGGAAATAAATATGAAACTAGATGCCCTTATATTTATATTACAATTTCCAGTTTATTTTCGAAAATCATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTGCTCTTGCCAACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCCTGTACTGATTGTTTTGCTCCAATATGTTCCTAGATTGTATCTCATTTTCCCACTAAGTTCTCAGATCATCAAAGCCACTGGTGTGGTCACAAAGACAGCTTGGGCCGGGGCTGCGTATAATCTCATACTCTACAGTCTACATGTTAGCTAG

Protein Analysis

202

Amino Acids

22.9

Weight (kDa)

9.91

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 45 - 195 2.6e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025076)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293501
rosa_samantha Rh5CG425800
rosa_wichuraiana Rw6G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 595
AclWI GGATC 2 cut(s) 311, 324
AcoI YGGCCR 1 cut(s) 439
AfaI GTAC 1 cut(s) 462
AflIII ACRYGT 2 cut(s) 203, 598
AgsI TTSAA 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 4 cut(s) 374, 429, 557, 606
AluI AGCT 4 cut(s) 374, 429, 557, 606
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 311, 324
AoxI GGCC 2 cut(s) 439, 561
ApeKI GCWGC 1 cut(s) 569
ArsI GACNNNNNNTTYG 1 cut(s) 27
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 2 cut(s) 267, 314
AsuII TTCGAA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 441
BamHI GGATCC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 556
BcnI CCSGG 1 cut(s) 565
BfaI CTAG 5 cut(s) 117, 285, 333, 489, 607
BfmI CTRYAG 2 cut(s) 417, 589
BfuAI ACCTGC 1 cut(s) 424
BglII AGATCT 1 cut(s) 364
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 565
BmsI GCATC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 415
Bpu14I TTCGAA 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 564
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bse1I ACTGG 3 cut(s) 147, 432, 541
BseDI CCNNGG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 335, 404, 533
BseNI ACTGG 3 cut(s) 147, 432, 541
BseXI GCAGC 1 cut(s) 556
BshFI GGCC 2 cut(s) 441, 563
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 564
BsnI GGCC 2 cut(s) 441, 563
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 316, 347, 364, 522
BspANI GGCC 2 cut(s) 441, 563
BspCNI CTCAG 3 cut(s) 336, 403, 532
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 2 cut(s) 311, 324
BspT104I TTCGAA 1 cut(s) 158
BsrI ACTGG 3 cut(s) 147, 432, 541
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 4 cut(s) 316, 347, 364, 522
Bst4CI ACNGT 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 158
BstDEI CTNAG 4 cut(s) 344, 390, 512, 519
BstKTI GATC 4 cut(s) 319, 350, 367, 525
BstMBI GATC 4 cut(s) 316, 347, 364, 522
BstMWI GCNNNNNNNGC 2 cut(s) 235, 569
BstNSI RCATGY 3 cut(s) 207, 229, 602
BstSCI CCNGG 1 cut(s) 563
BstSFI CTRYAG 2 cut(s) 417, 589
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 2 cut(s) 316, 364
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 316, 364
BsuRI GGCC 2 cut(s) 441, 563
BtsI GCAGTG 2 cut(s) 5, 377
BtsIMutI CAGTG 3 cut(s) 5, 377, 534
BveI ACCTGC 1 cut(s) 424
CciI TCATGA 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 461
CviAII CATG 4 cut(s) 166, 204, 226, 599
CviJI RGCY 8 cut(s) 374, 429, 441, 533, 557, 563, 569, 606
CviKI_1 RGCY 8 cut(s) 374, 429, 441, 533, 557, 563, 569, 606
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 4 cut(s) 344, 390, 512, 519
DpnI GATC 4 cut(s) 318, 349, 366, 524
DpnII GATC 4 cut(s) 316, 347, 364, 522
EaeI YGGCCR 1 cut(s) 439
Eco32I GATATC 1 cut(s) 171
EcoRV GATATC 1 cut(s) 171
FaeI CATG 4 cut(s) 169, 207, 229, 602
FatI CATG 4 cut(s) 165, 203, 225, 598
FauNDI CATATG 2 cut(s) 77, 401
FblI GTMKAC 1 cut(s) 595
Fnu4HI GCNGC 1 cut(s) 570
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 5 cut(s) 117, 285, 333, 489, 607
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 2 cut(s) 441, 563
HapII CCGG 1 cut(s) 564
Hin1II CATG 4 cut(s) 169, 207, 229, 602
HpaII CCGG 1 cut(s) 564
HphI GGTGA 2 cut(s) 267, 314
Hpy166II GTNNAC 2 cut(s) 305, 596
Hpy188I TCNGA 4 cut(s) 345, 352, 393, 522
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 305, 596
HpyAV CCTTC 2 cut(s) 91, 330
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 569
HpyF3I CTNAG 4 cut(s) 344, 390, 512, 519
Hsp92II CATG 4 cut(s) 169, 207, 229, 602
Kzo9I GATC 4 cut(s) 316, 347, 364, 522
LmnI GCTCC 2 cut(s) 434, 480
LpnPI CCDG 7 cut(s) 160, 423, 429, 445, 471, 522, 577
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 110
MaeI CTAG 5 cut(s) 117, 285, 333, 489, 607
MaeIII GTNAC 2 cut(s) 199, 544
MalI GATC 4 cut(s) 318, 349, 366, 524
MboI GATC 4 cut(s) 316, 347, 364, 522
MboII GAAGA 1 cut(s) 349
MflI RGATCY 2 cut(s) 316, 364
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 4 cut(s) 34, 57, 141, 192
MluNI TGGCCA 1 cut(s) 441
MnlI CCTC 5 cut(s) 86, 252, 291, 393, 399
Mox20I TGGCCA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 441
MseI TTAA 2 cut(s) 60, 423
MslI CAYNNNNRTG 1 cut(s) 539
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 235, 569
NciI CCSGG 1 cut(s) 565
NdeI CATATG 2 cut(s) 77, 401
NdeII GATC 4 cut(s) 316, 347, 364, 522
NlaIII CATG 4 cut(s) 169, 207, 229, 602
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 2 cut(s) 199, 544
NspI RCATGY 3 cut(s) 207, 229, 602
NspV TTCGAA 1 cut(s) 158
OliI CACNNNNGTG 1 cut(s) 539
PagI TCATGA 1 cut(s) 165
PciI ACATGT 2 cut(s) 203, 598
PkrI GCNGC 1 cut(s) 571
PscI ACATGT 2 cut(s) 203, 598
PshBI ATTAAT 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 561
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 316, 364
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 2 cut(s) 60, 423
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 4 cut(s) 316, 347, 364, 522
Sau96I GGNCC 1 cut(s) 561
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 1 cut(s) 217
SetI ASST 6 cut(s) 341, 376, 418, 431, 559, 608
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 2 cut(s) 417, 589
SfuI TTCGAA 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 4 cut(s) 34, 57, 141, 192
SspMI CTAG 5 cut(s) 117, 285, 333, 489, 607
StyD4I CCNGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 593
TaqI TCGA 1 cut(s) 158
TasI AATT 4 cut(s) 34, 57, 141, 192
TatI WGTACW 1 cut(s) 460
Tru1I TTAA 2 cut(s) 60, 423
Tru9I TTAA 2 cut(s) 60, 423
TscAI CASTG 3 cut(s) 12, 384, 541
TseFI GTSAC 2 cut(s) 199, 544
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 2 cut(s) 199, 544
TspDTI ATGAA 5 cut(s) 64, 126, 230, 238, 397
TspRI CASTG 3 cut(s) 12, 384, 541
VspI ATTAAT 1 cut(s) 60
XceI RCATGY 3 cut(s) 207, 229, 602
XmiI GTMKAC 1 cut(s) 595
XspI CTAG 5 cut(s) 117, 285, 333, 489, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.