Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025076

Physical Location & Seq

Genomic Coordinates Reverse (-)

58870916 .. 58873494

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACACTGCCTTTGTGTCTTACTAAATGGTCTAATTCTGTTTCTTTGCCAAAACAAATTAATGACTTCCTTTTCATATGTGTAAAAGATAGAGGGAAGGGAAATAAATATGAAACTAGATGCCCTTATATTTATATTACAATTTCCAGTTTATTTTCGAAAATCATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTTTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTTGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCCTGTACTGATTGTTCTACTCCAATATGTTCCTAGATTGTATCTCATTTTCCCACTAAGTTCTCAGATCATCAAAGCCACTGGTGTGGTCACAAAGACAGCTTGGGCTGGCGTTGCGTATAATCTCATACTCTACAGTCTACATATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

202

Amino Acids

22.96

Weight (kDa)

9.84

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	45 - 194	1e-06	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025076)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0293501
rosa_samantha	Rh5CG425800
rosa_wichuraiana	Rw6G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	595
AclWI	GGATC	2 cut(s)	311, 324
AcoI	YGGCCR	1 cut(s)	439
AfaI	GTAC	2 cut(s)	214, 462
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	374, 429, 557, 606
AluI	AGCT	4 cut(s)	374, 429, 557, 606
AlwI	GGATC	2 cut(s)	311, 324
AoxI	GGCC	1 cut(s)	439
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	267, 314
AsuII	TTCGAA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	316
BfaI	CTAG	5 cut(s)	117, 285, 333, 489, 607
BfmI	CTRYAG	2 cut(s)	417, 589
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	3 cut(s)	147, 432, 541
BseMII	CTCAG	3 cut(s)	335, 404, 533
BseNI	ACTGG	3 cut(s)	147, 432, 541
BshFI	GGCC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	316, 347, 364, 522
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	336, 403, 532
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	311, 324
BspT104I	TTCGAA	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	147, 432, 541
BssMI	GATC	4 cut(s)	316, 347, 364, 522
Bst4CI	ACNGT	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	4 cut(s)	344, 390, 512, 519
BstKTI	GATC	4 cut(s)	319, 350, 367, 525
BstMBI	GATC	4 cut(s)	316, 347, 364, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 569
BstNSI	RCATGY	2 cut(s)	207, 229
BstSFI	CTRYAG	2 cut(s)	417, 589
BstX2I	RGATCY	2 cut(s)	316, 364
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	2 cut(s)	316, 364
BsuRI	GGCC	1 cut(s)	441
BtsI	GCAGTG	2 cut(s)	5, 377
BtsIMutI	CAGTG	3 cut(s)	5, 377, 534
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	565
CciI	TCATGA	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	213, 461
CviAII	CATG	3 cut(s)	166, 204, 226
CviJI	RGCY	7 cut(s)	374, 429, 441, 533, 557, 563, 606
CviKI_1	RGCY	7 cut(s)	374, 429, 441, 533, 557, 563, 606
CviQI	GTAC	2 cut(s)	213, 461
DdeI	CTNAG	4 cut(s)	344, 390, 512, 519
DpnI	GATC	4 cut(s)	318, 349, 366, 524
DpnII	GATC	4 cut(s)	316, 347, 364, 522
EaeI	YGGCCR	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	171
FaeI	CATG	3 cut(s)	169, 207, 229
FatI	CATG	3 cut(s)	165, 203, 225
FauNDI	CATATG	2 cut(s)	77, 401
FblI	GTMKAC	1 cut(s)	595
FspBI	CTAG	5 cut(s)	117, 285, 333, 489, 607
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	169, 207, 229
HphI	GGTGA	2 cut(s)	267, 314
Hpy166II	GTNNAC	2 cut(s)	305, 596
Hpy188I	TCNGA	4 cut(s)	345, 352, 393, 522
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	305, 596
HpyAV	CCTTC	2 cut(s)	91, 330
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 569
HpyF3I	CTNAG	4 cut(s)	344, 390, 512, 519
Hsp92II	CATG	3 cut(s)	169, 207, 229
Kzo9I	GATC	4 cut(s)	316, 347, 364, 522
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	7 cut(s)	160, 423, 429, 445, 471, 522, 549
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	5 cut(s)	117, 285, 333, 489, 607
MaeIII	GTNAC	2 cut(s)	199, 544
MalI	GATC	4 cut(s)	318, 349, 366, 524
MboI	GATC	4 cut(s)	316, 347, 364, 522
MflI	RGATCY	2 cut(s)	316, 364
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	4 cut(s)	34, 57, 141, 192
MluNI	TGGCCA	1 cut(s)	441
MnlI	CCTC	5 cut(s)	86, 252, 291, 393, 399
Mox20I	TGGCCA	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	2 cut(s)	60, 423
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	235, 569
NdeI	CATATG	2 cut(s)	77, 401
NdeII	GATC	4 cut(s)	316, 347, 364, 522
NlaIII	CATG	3 cut(s)	169, 207, 229
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	2 cut(s)	199, 544
NspI	RCATGY	2 cut(s)	207, 229
NspV	TTCGAA	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	539
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	1 cut(s)	203
PscI	ACATGT	1 cut(s)	203
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	318
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	316, 364
RsaI	GTAC	2 cut(s)	214, 462
RsaNI	GTAC	2 cut(s)	213, 461
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	60, 423
Sau3AI	GATC	4 cut(s)	316, 347, 364, 522
SetI	ASST	6 cut(s)	341, 376, 418, 431, 559, 608
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	417, 589
SfuI	TTCGAA	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	34, 57, 141, 192
SspMI	CTAG	5 cut(s)	117, 285, 333, 489, 607
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	34, 57, 141, 192
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	60, 423
Tru9I	TTAA	2 cut(s)	60, 423
TscAI	CASTG	3 cut(s)	12, 384, 541
TseFI	GTSAC	2 cut(s)	199, 544
Tsp45I	GTSAC	2 cut(s)	199, 544
TspDTI	ATGAA	5 cut(s)	64, 126, 230, 238, 397
TspRI	CASTG	3 cut(s)	12, 384, 541
VspI	ATTAAT	1 cut(s)	60
XceI	RCATGY	2 cut(s)	207, 229
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	5 cut(s)	117, 285, 333, 489, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.