Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0025076

Physical Location & Seq

Genomic Coordinates Forward (+)

11660780 .. 11661693

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACACTGCCTTTGTGTCTTACTAAATGGTCTAATTCTGTTTCTTTGCCAAAACAAATTAATGACTTCCTTTTCATATGTGTAAAAGATAGAGGGAAGGGAAATAAATATGAAACTGGATGCCCTTATATTTATATTACAATTTCCAGTTTATTTTTGAAAATCATGATATCAACTGATTTGAACTTTGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCTCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCTTGTACTGATTGTTCTGCTCCAATATGTTCCTAGATTGTATCTCATTTTCCCACTAAGTTCTCAGATCATCAAAGCCACTGGTGTGGTCACAATGACAGCTTGGGCCAGGGCTGCGTATAATCTCATACTCTACAGTCTACATGTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

202

Amino Acids

23.01

Weight (kDa)

9.8

Isoelectric Point (pI)

27.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025076)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0293501
rosa_samantha	Rh5CG425800
rosa_wichuraiana	Rw6G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	595
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	439
AfaI	GTAC	2 cut(s)	214, 462
AflIII	ACRYGT	2 cut(s)	203, 598
AgsI	TTSAA	2 cut(s)	160, 184
AjnI	CCWGG	1 cut(s)	563
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	374, 429, 557, 606
AluI	AGCT	4 cut(s)	374, 429, 557, 606
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	2 cut(s)	439, 561
ApeKI	GCWGC	1 cut(s)	569
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	267, 314
BalI	TGGCCA	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	565
BfaI	CTAG	4 cut(s)	285, 333, 489, 607
BfmI	CTRYAG	2 cut(s)	417, 589
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	4 cut(s)	121, 147, 432, 541
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	335, 404, 533
BseNI	ACTGG	4 cut(s)	121, 147, 432, 541
BseXI	GCAGC	1 cut(s)	556
BshFI	GGCC	2 cut(s)	441, 563
BsnI	GGCC	2 cut(s)	441, 563
Bsp143I	GATC	4 cut(s)	316, 347, 364, 522
BspANI	GGCC	2 cut(s)	441, 563
BspCNI	CTCAG	3 cut(s)	336, 403, 532
BspHI	TCATGA	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	324
BsrI	ACTGG	4 cut(s)	121, 147, 432, 541
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	316, 347, 364, 522
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	593
BstDEI	CTNAG	4 cut(s)	344, 390, 512, 519
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	4 cut(s)	319, 350, 367, 525
BstMBI	GATC	4 cut(s)	316, 347, 364, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 569
BstNI	CCWGG	1 cut(s)	565
BstNSI	RCATGY	3 cut(s)	207, 229, 602
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	2 cut(s)	417, 589
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	2 cut(s)	316, 364
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	2 cut(s)	316, 364
BsuRI	GGCC	2 cut(s)	441, 563
BtsCI	GGATG	1 cut(s)	125
BtsI	GCAGTG	2 cut(s)	5, 377
BtsIMutI	CAGTG	3 cut(s)	5, 377, 534
BveI	ACCTGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	213, 461
CviAII	CATG	4 cut(s)	166, 204, 226, 599
CviJI	RGCY	8 cut(s)	374, 429, 441, 533, 557, 563, 569, 606
CviKI_1	RGCY	8 cut(s)	374, 429, 441, 533, 557, 563, 569, 606
CviQI	GTAC	2 cut(s)	213, 461
DdeI	CTNAG	4 cut(s)	344, 390, 512, 519
DpnI	GATC	4 cut(s)	318, 349, 366, 524
DpnII	GATC	4 cut(s)	316, 347, 364, 522
EaeI	YGGCCR	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	171
FaeI	CATG	4 cut(s)	169, 207, 229, 602
FatI	CATG	4 cut(s)	165, 203, 225, 598
FauNDI	CATATG	2 cut(s)	77, 401
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	4 cut(s)	285, 333, 489, 607
GluI	GCNGC	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	441, 563
Hin1II	CATG	4 cut(s)	169, 207, 229, 602
HphI	GGTGA	2 cut(s)	267, 314
Hpy166II	GTNNAC	2 cut(s)	305, 596
Hpy188I	TCNGA	4 cut(s)	345, 352, 393, 522
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	305, 596
HpyAV	CCTTC	2 cut(s)	91, 330
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 569
HpyF3I	CTNAG	4 cut(s)	344, 390, 512, 519
Hsp92II	CATG	4 cut(s)	169, 207, 229, 602
Kzo9I	GATC	4 cut(s)	316, 347, 364, 522
LmnI	GCTCC	2 cut(s)	434, 480
LpnPI	CCDG	8 cut(s)	102, 160, 423, 429, 445, 522, 550, 577
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	4 cut(s)	285, 333, 489, 607
MaeIII	GTNAC	2 cut(s)	199, 544
MalI	GATC	4 cut(s)	318, 349, 366, 524
MboI	GATC	4 cut(s)	316, 347, 364, 522
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	2 cut(s)	316, 364
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	4 cut(s)	34, 57, 141, 192
MluNI	TGGCCA	1 cut(s)	441
MnlI	CCTC	5 cut(s)	86, 252, 291, 393, 399
Mox20I	TGGCCA	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	2 cut(s)	60, 423
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	235, 569
NdeI	CATATG	2 cut(s)	77, 401
NdeII	GATC	4 cut(s)	316, 347, 364, 522
NlaIII	CATG	4 cut(s)	169, 207, 229, 602
NmuCI	GTSAC	2 cut(s)	199, 544
NspI	RCATGY	3 cut(s)	207, 229, 602
OliI	CACNNNNGTG	1 cut(s)	539
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	2 cut(s)	203, 598
PkrI	GCNGC	1 cut(s)	571
PscI	ACATGT	2 cut(s)	203, 598
PshBI	ATTAAT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PspPI	GGNCC	1 cut(s)	561
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	316, 364
RsaI	GTAC	2 cut(s)	214, 462
RsaNI	GTAC	2 cut(s)	213, 461
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	60, 423
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	4 cut(s)	316, 347, 364, 522
Sau96I	GGNCC	1 cut(s)	561
ScrFI	CCNGG	1 cut(s)	565
SetI	ASST	6 cut(s)	341, 376, 418, 431, 559, 608
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	417, 589
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	34, 57, 141, 192
SspMI	CTAG	4 cut(s)	285, 333, 489, 607
StyD4I	CCNGG	1 cut(s)	563
TaaI	ACNGT	1 cut(s)	593
TasI	AATT	4 cut(s)	34, 57, 141, 192
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	60, 423
Tru9I	TTAA	2 cut(s)	60, 423
TscAI	CASTG	3 cut(s)	12, 384, 541
TseFI	GTSAC	2 cut(s)	199, 544
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	199, 544
TspDTI	ATGAA	5 cut(s)	64, 126, 230, 238, 397
TspRI	CASTG	3 cut(s)	12, 384, 541
VspI	ATTAAT	1 cut(s)	60
XceI	RCATGY	3 cut(s)	207, 229, 602
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	4 cut(s)	285, 333, 489, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.