RchiOBHm_Chr6g0293661

Alpha-soluble nsf attachment protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
56248656 .. 56249858
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1203 bp
ATGGAGGATCATATTGCTAGAGCAGAGAAATTTGAAAAGAAAGCAAATAAGAAGCTTCATGGATGGAGAGTTTTTGGTTCCAAACGCGATGATATTGCCGAACTGTTGGATCATGCTGCCACCTCTTACAAACTCGCCAAAGCCTGGGATAAAGCGAAAGAAATGTACATCAAGTTGGCAAAGTATCATTTGAAGACCAAAACCGAACATGAAGCCGCCGCCACAGCTTTTGTTAATGCTGCACATTGCTGCGACATAACATCTGTTGATGAGGTCATTTCTTGTCTAGAGCAGGGAGTCGATTACCTTCTCGAAACCGGAAATTTCAATGCAGCTGCAACATGTTTTGACAAAGCTGCACGCTTGTATAAGGAAATTGCGGAACTATATGAATCCCAAGAGAATATTGAGAAGGCTATTGAGTTCTTCGAAAAGGCATCTGAGCTCCCTTCAAATGAAGAATTATCAAGTTCCGTGAACCAGTGCTATGAAAAAGCCGCTCAACTTGCTGCTCAGATTGAGCAATATCCCAAGGCCATTGAAATCTACGAAAATATGGCGAGTTACTCGCTCAACCACAGATTGCTCAAGCACAAAGTTAAGGGGCATCTTTTCAAGGCCGGAATATGCAGGCTCTGCAGAGGAGATGACGCTGCAGTTGCAATGGTCAAGCAATACGCAGATTCATATCCAAGTTTTCGTGATACATGGCAGTGCAAATCCCTGGAGGATATAGCAGTTTCAGTTAATAAACGTGACCTTACCATGTTCCGTGATGTGGTGAAGGAATTCAAAGGTATGACACCACTGGATTCATGGACAACCAACTTGCTGTTGAGAGTGGAGGAGAAGCTGAAAACTTCGAAGTCCGTGAGAACGCGACGGCCAACCAAGGCGTTAGACTTGAAACCTAGCTCCACCACTAAATTTGGTGATAGAGGGAAGCAAAGGAAGATGTGCACCGGCTTGGAAAGATCCCGGACGACTATAGGGGGCACGTCAACGACGACAGGAAGTAAACTCTTGCCGTCTAGCTCAAGGATCAAAACCGGTGTTGATACAAGCAAGGAGGAGATCAGGAATATGGGAGAGATGCTTCTGACGAATTGGCCGTTCCTCGCAGAGACCTTCAGACAAGCCTTCTTATCGGCCGGCCAAATGTCCTCCATAAGGGACTTACCTTCAAAAGAAGCTTGCATGTGA

Protein Analysis

400

Amino Acids

45.17

Weight (kDa)

8.8

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAP PF14938 7 - 285 4.7e-73 Soluble NSF attachment protein, SNAP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018623)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293661
rosa_laevigata RLG00000011935
rosa_multiflora Rmu_sc0008436.1_g000004
rosa_roxburghii Rroxscaffold_7G00174010
rosa_rugosa Rorug06G0237100.1
rosa_samantha Rh6AG349800 Rh6BG357300 Rh6CG364100 Rh6DG351000
rosa_wichuraiana Rw6G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 500
AccII CGCG 2 cut(s) 87, 880
AciI CCGC 4 cut(s) 216, 219, 380, 498
AclWI GGATC 4 cut(s) 15, 117, 969, 1049
AcoI YGGCCR 4 cut(s) 884, 1109, 1149, 1153
AcsI RAATTY 4 cut(s) 29, 322, 788, 926
AcuI CTGAAG 1 cut(s) 1114
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 144, 778, 1170
AflIII ACRYGT 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 9 cut(s) 35, 193, 328, 453, 542, 616, 793, 907, 1185
AjiI CACGTC 1 cut(s) 999
AjnI CCWGG 2 cut(s) 143, 723
AluBI AGCT 9 cut(s) 55, 227, 335, 356, 445, 853, 915, 1035, 1193
AluI AGCT 9 cut(s) 55, 227, 335, 356, 445, 853, 915, 1035, 1193
Alw21I GWGCWC 2 cut(s) 447, 962
Alw26I GTCTC 1 cut(s) 1118
Alw44I GTGCAC 1 cut(s) 958
AlwI GGATC 4 cut(s) 15, 117, 969, 1049
AlwNI CAGNNNCTG 1 cut(s) 636
AoxI GGCC 6 cut(s) 534, 618, 884, 1109, 1149, 1153
ApaLI GTGCAC 1 cut(s) 958
ApeKI GCWGC 8 cut(s) 116, 239, 249, 332, 335, 356, 509, 653
ApoI RAATTY 4 cut(s) 29, 322, 788, 926
AsiGI ACCGGT 1 cut(s) 1049
Asp700I GAANNNNTTC 1 cut(s) 788
AsuC2I CCSGG 1 cut(s) 979
AsuHPI GGTGA 2 cut(s) 793, 944
AsuII TTCGAA 2 cut(s) 429, 863
BaeGI GKGCMC 2 cut(s) 962, 998
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 447, 962
BbvI GCAGC 8 cut(s) 103, 226, 236, 322, 343, 344, 496, 640
BccI CCATC 1 cut(s) 57
BceAI ACGGC 3 cut(s) 899, 1012, 1096
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 2 cut(s) 145, 725
BcnI CCSGG 1 cut(s) 979
BcoDI GTCTC 1 cut(s) 1118
BfaI CTAG 4 cut(s) 18, 287, 912, 1032
BfmI CTRYAG 3 cut(s) 637, 654, 987
Bme1390I CCNGG 3 cut(s) 145, 725, 979
BmgBI CACGTC 1 cut(s) 999
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 3 cut(s) 145, 725, 979
BmsI GCATC 3 cut(s) 446, 616, 1083
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 746
Bpu14I TTCGAA 2 cut(s) 429, 863
BpuEI CTTGAG 2 cut(s) 572, 1021
BpuMI CCSGG 1 cut(s) 979
BsaBI GATNNNNATC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 1118
BsaJI CCNNGG 4 cut(s) 144, 531, 723, 891
BsaWI WCCGGW 2 cut(s) 317, 1049
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 778, 1170
Bse118I RCCGGY 3 cut(s) 962, 1049, 1151
Bse1I ACTGG 2 cut(s) 481, 813
Bse3DI GCAATG 2 cut(s) 244, 669
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 2 cut(s) 145, 725
BseDI CCNNGG 4 cut(s) 144, 531, 723, 891
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 3 cut(s) 144, 778, 1170
BseMI GCAATG 2 cut(s) 244, 669
BseMII CTCAG 2 cut(s) 432, 527
BseNI ACTGG 2 cut(s) 481, 813
BseRI GAGGAG 3 cut(s) 657, 860, 1085
BseSI GKGCMC 2 cut(s) 962, 998
BseX3I CGGCCG 1 cut(s) 1149
BseXI GCAGC 8 cut(s) 103, 226, 236, 322, 343, 344, 496, 640
BsgI GTGCAG 2 cut(s) 225, 342
Bsh1236I CGCG 2 cut(s) 87, 880
Bsh1285I CGRYCG 1 cut(s) 1152
BshFI GGCC 6 cut(s) 536, 620, 886, 1111, 1151, 1155
BshTI ACCGGT 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 1152
BsiHKAI GWGCWC 2 cut(s) 447, 962
BsiSI CCGG 6 cut(s) 318, 621, 963, 979, 1050, 1152
BslFI GGGAC 1 cut(s) 1187
BslI CCNNNNNNNGG 3 cut(s) 144, 778, 1170
BsmAI GTCTC 1 cut(s) 1118
BsmFI GGGAC 1 cut(s) 1187
BsnI GGCC 6 cut(s) 536, 620, 886, 1111, 1151, 1155
Bso31I GGTCTC 1 cut(s) 1118
Bsp119I TTCGAA 2 cut(s) 429, 863
Bsp1286I GDGCHC 3 cut(s) 447, 962, 998
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 5 cut(s) 7, 109, 974, 1041, 1074
BspACI CCGC 4 cut(s) 216, 219, 380, 498
BspANI GGCC 6 cut(s) 536, 620, 886, 1111, 1151, 1155
BspCNI CTCAG 2 cut(s) 433, 526
BspFNI CGCG 2 cut(s) 87, 880
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 641, 658
BspPI GGATC 4 cut(s) 15, 117, 969, 1049
BspT104I TTCGAA 2 cut(s) 429, 863
BspTNI GGTCTC 1 cut(s) 1118
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 2 cut(s) 244, 669
BsrFI RCCGGY 3 cut(s) 962, 1049, 1151
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 481, 813
BssAI RCCGGY 3 cut(s) 962, 1049, 1151
BssECI CCNNGG 4 cut(s) 144, 531, 723, 891
BssMI GATC 5 cut(s) 7, 109, 974, 1041, 1074
BssT1I CCWWGG 2 cut(s) 531, 891
Bst2UI CCWGG 2 cut(s) 145, 725
Bst4CI ACNGT 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 636
BstAUI TGTACA 1 cut(s) 165
BstBI TTCGAA 2 cut(s) 429, 863
BstC8I GCNNGC 4 cut(s) 361, 632, 1153, 1195
BstDEI CTNAG 2 cut(s) 441, 513
BstENI CCTNNNNNAGG 1 cut(s) 1168
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 87, 880
BstKTI GATC 5 cut(s) 10, 112, 977, 1044, 1077
BstMAI GTCTC 1 cut(s) 1118
BstMBI GATC 5 cut(s) 7, 109, 974, 1041, 1074
BstMCI CGRYCG 1 cut(s) 1152
BstMWI GCNNNNNNNGC 4 cut(s) 224, 506, 636, 659
BstNI CCWGG 2 cut(s) 145, 725
BstNSI RCATGY 2 cut(s) 345, 1201
BstSCI CCNGG 3 cut(s) 143, 723, 977
BstSFI CTRYAG 3 cut(s) 637, 654, 987
BstSLI GKGCMC 2 cut(s) 962, 998
BstUI CGCG 2 cut(s) 87, 880
BstV1I GCAGC 8 cut(s) 103, 226, 236, 322, 343, 344, 496, 640
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 974
BstYI RGATCY 1 cut(s) 974
BstZI CGGCCG 1 cut(s) 1149
BsuRI GGCC 6 cut(s) 536, 620, 886, 1111, 1151, 1155
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 999
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 3 cut(s) 488, 719, 806
Cac8I GCNNGC 4 cut(s) 361, 632, 1153, 1195
CaiI CAGNNNCTG 1 cut(s) 636
Cfr10I RCCGGY 3 cut(s) 962, 1049, 1151
CseI GACGC 1 cut(s) 659
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 1049
CspCI CAANNNNNGTGG 4 cut(s) 211, 246, 910, 945
CviAII CATG 8 cut(s) 59, 113, 209, 342, 708, 766, 816, 1198
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 441, 513
DpnI GATC 5 cut(s) 9, 111, 976, 1043, 1076
DpnII GATC 5 cut(s) 7, 109, 974, 1041, 1074
EaeI YGGCCR 4 cut(s) 884, 1109, 1149, 1153
EagI CGGCCG 1 cut(s) 1149
Ecl136II GAGCTC 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 531, 891
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 1118
Eco52I CGGCCG 1 cut(s) 1149
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 1114
EcoICRI GAGCTC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 1168
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 143, 723
EcoT14I CCWWGG 2 cut(s) 531, 891
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 531, 891
FaeI CATG 8 cut(s) 62, 116, 212, 345, 711, 769, 819, 1201
FaqI GGGAC 1 cut(s) 1187
FatI CATG 8 cut(s) 58, 112, 208, 341, 707, 765, 815, 1197
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 447
FseI GGCCGGCC 1 cut(s) 1155
FspBI CTAG 4 cut(s) 18, 287, 912, 1032
GsuI CTGGAG 1 cut(s) 746
HaeIII GGCC 6 cut(s) 536, 620, 886, 1111, 1151, 1155
HapII CCGG 6 cut(s) 318, 621, 963, 979, 1050, 1152
HgaI GACGC 1 cut(s) 659
Hin1II CATG 8 cut(s) 62, 116, 212, 345, 711, 769, 819, 1201
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HindIII AAGCTT 2 cut(s) 53, 1191
HinfI GANTC 4 cut(s) 297, 392, 683, 812
HpaII CCGG 6 cut(s) 318, 621, 963, 979, 1050, 1152
HphI GGTGA 2 cut(s) 793, 944
Hpy166II GTNNAC 4 cut(s) 478, 960, 1002, 1019
Hpy188I TCNGA 4 cut(s) 442, 516, 1101, 1133
Hpy188III TCNNGA 4 cut(s) 287, 311, 701, 1078
Hpy8I GTNNAC 4 cut(s) 478, 960, 1002, 1019
Hpy99I CGWCG 2 cut(s) 885, 1009
HpyAV CCTTC 7 cut(s) 317, 406, 459, 778, 1138, 1150, 1191
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 2 cut(s) 754, 998
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 506, 636, 659
HpyF3I CTNAG 2 cut(s) 441, 513
HpySE526I ACGT 2 cut(s) 754, 998
Hsp92II CATG 8 cut(s) 62, 116, 212, 345, 711, 769, 819, 1201
KroI GCCGGC 1 cut(s) 1151
KroNI GCCGGC 1 cut(s) 1153
Kzo9I GATC 5 cut(s) 7, 109, 974, 1041, 1074
LmnI GCTCC 2 cut(s) 450, 920
Lsp1109I GCAGC 8 cut(s) 103, 226, 236, 322, 343, 344, 496, 640
LweI GCATC 3 cut(s) 446, 616, 1083
MaeI CTAG 4 cut(s) 18, 287, 912, 1032
MaeII ACGT 2 cut(s) 754, 998
MaeIII GTNAC 2 cut(s) 563, 755
MalI GATC 5 cut(s) 9, 111, 976, 1043, 1076
MbiI CCGCTC 1 cut(s) 500
MboI GATC 5 cut(s) 7, 109, 974, 1041, 1074
MboII GAAGA 4 cut(s) 205, 418, 470, 964
MflI RGATCY 1 cut(s) 974
MhlI GDGCHC 3 cut(s) 447, 962, 998
MluCI AATT 7 cut(s) 29, 322, 375, 461, 788, 926, 1105
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 9 cut(s) 133, 265, 635, 721, 838, 932, 1063, 1127, 1174
MroNI GCCGGC 1 cut(s) 1151
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 3 cut(s) 234, 600, 747
MslI CAYNNNNRTG 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 6 cut(s) 318, 621, 963, 979, 1050, 1152
MspR9I CCNGG 3 cut(s) 145, 725, 979
MvaI CCWGG 2 cut(s) 145, 725
MvnI CGCG 2 cut(s) 87, 880
MwoI GCNNNNNNNGC 4 cut(s) 224, 506, 636, 659
NaeI GCCGGC 1 cut(s) 1153
NciI CCSGG 1 cut(s) 979
NdeII GATC 5 cut(s) 7, 109, 974, 1041, 1074
NgoMIV GCCGGC 1 cut(s) 1151
NlaIII CATG 8 cut(s) 62, 116, 212, 345, 711, 769, 819, 1201
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 2 cut(s) 345, 1201
NspV TTCGAA 2 cut(s) 429, 863
PciI ACATGT 1 cut(s) 341
PcsI WCGNNNNNNNCGW 2 cut(s) 1004, 1109
PdiI GCCGGC 1 cut(s) 1153
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 3 cut(s) 392, 683, 812
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 977
PinAI ACCGGT 1 cut(s) 1049
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PscI ACATGT 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 143, 723
PspGI CCWGG 2 cut(s) 143, 723
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 2 cut(s) 641, 658
PstNI CAGNNNCTG 1 cut(s) 636
PsuI RGATCY 1 cut(s) 974
PvuII CAGCTG 1 cut(s) 335
RigI GGCCGGCC 1 cut(s) 1155
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 712
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 234, 600, 747
Sau3AI GATC 5 cut(s) 7, 109, 974, 1041, 1074
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 3 cut(s) 145, 725, 979
SduI GDGCHC 3 cut(s) 447, 962, 998
SfaNI GCATC 3 cut(s) 446, 616, 1083
SfcI CTRYAG 3 cut(s) 637, 654, 987
SfuI TTCGAA 2 cut(s) 429, 863
SmiMI CAYNNNNRTG 1 cut(s) 712
SmlI CTYRAG 2 cut(s) 587, 1036
SmoI CTYRAG 2 cut(s) 587, 1036
Sse9I AATT 7 cut(s) 29, 322, 375, 461, 788, 926, 1105
SsiI CCGC 4 cut(s) 216, 219, 380, 498
SspI AATATT 1 cut(s) 406
SspMI CTAG 4 cut(s) 18, 287, 912, 1032
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 143, 723, 977
StyI CCWWGG 2 cut(s) 531, 891
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 2 cut(s) 757, 1001
TaqI TCGA 4 cut(s) 300, 312, 429, 863
TasI AATT 7 cut(s) 29, 322, 375, 461, 788, 926, 1105
TatI WGTACW 1 cut(s) 165
TauI GCSGC 3 cut(s) 218, 221, 500
TfiI GAWTC 3 cut(s) 392, 683, 812
Tru1I TTAA 3 cut(s) 234, 600, 747
Tru9I TTAA 3 cut(s) 234, 600, 747
TscAI CASTG 3 cut(s) 488, 719, 813
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 8 cut(s) 116, 239, 249, 332, 335, 356, 509, 653
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 7 cut(s) 47, 225, 405, 471, 504, 675, 804
TspGWI ACGGA 3 cut(s) 463, 761, 859
TspRI CASTG 3 cut(s) 488, 719, 813
Van91I CCANNNNNTGG 1 cut(s) 144
VneI GTGCAC 1 cut(s) 958
XagI CCTNNNNNAGG 1 cut(s) 1168
XapI RAATTY 4 cut(s) 29, 322, 788, 926
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 2 cut(s) 345, 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 813
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 4 cut(s) 18, 287, 912, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.