Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018623

Physical Location & Seq

Genomic Coordinates Reverse (-)

54598850 .. 54601960

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGAGGATCATATTGCTAGAGCAGAGAAATTTGAAAAGAAAGCAAATAAGAAGCTTCATGGATGGAGAGTTTTTGGTTCCAAACGCGATGGTATTGCCGAACTGTTGGATCATGCTGCCACCTCTTACAAACTCGCCAAAGCCTGGGATAAAGCGAAAGAAATGTACATCAAGTTGGCAAAGTATCATTTGAAGACCAAAACCGAACATGAAGCCGCCGCCACAGCTTTTGTTAATGCTGCACATTGCTGCGACGTAACATCTGTTGATGAGGTCTTTTCTTGTCTAGAGCAGGGAGTCGATTACCTTCTCGAAACCGGAAAGTTCAATGCAGCTGCAACATGTTTTGACAAAGCTGCACGCTTGTATAAGGAAATTGCGGAACTATATGAATCCCAAGAGAATATTGAGAAGGCTATTGAGTTCTTCGAAAAGGCATCTGAGCTCCCTTCAAATAAAGAATTATCAAGTTCCGTGAACCAGTGCTACGAGAAAGCCGCTCAACTTGCTGCTCAGATTGAGCAATATCCCAAGGCCATTGAAATCTACGAAAATATGGCGAGTTACTCGCTCAACCACAGCTTGCTCAAGCACAAAGTTAAGGGGCATCTTTTCAAGGCCGGAATATGCAGGCTCTGCAGAGGAGATGACGCTGCAGTTGCAATGGTCAAGCAATACGCAGATTTATATCCAAGTTTTCGTGATACATGGCAGTGCAAATCCCTGGAGGATATAGCAGTTTCAGTTAATAAACGTGACCTTACCATGTTCCGTGATGTGGTGAAGGAATTCAAAAGTATGACACCACTGGATTCATGGACAACCAACTTGCTGTTGAGAGTGGAGGAGAAGCTGAAAACTTCGAAGTCCGTGAGAACGCGACGGCCAACCAACTCGTTAGACTTGAAACCTAGCTCCACCACTACATTTGGTGATAGAGCTAGGGAAGCAAAGGAAGATGTGCACCGGCTTGGAAAGATCCCGGACGACTACAGGGGGCACGTCAACGGCCACAGGAACACAGAAACTCAGAAACTTAAGATATTGACAATAAAGGATGATCATATTGCCATAGCGGAGAAATTGATAAAGAAAGCAAACAAGAAGTTGGATGGTTGGGGACTTATCGGTTCCAAACACAAAGATGTTGCCAAACTGTTGGATCAAGCTGCCAACTCTTACAAACTCGCCAAATCCTGGTATAAAGCTAGAGAAACATATAGCAATTTGGCAATACATCATTTGAAGACCAAAACCAAACTTGAAGCCGCTGCCACAGCTTTTGTTGATGCTGCACATTACTACTATATAACATCTGTTGATGAGGCCATTGATTGTCTAGAGCAAGGAGTAGATTACCTCTGTGAAATCGGAAGGCTTAACCCGGCTACAAACTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

467

Amino Acids

52.92

Weight (kDa)

8.71

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 285	1.6e-71	Soluble NSF attachment protein, SNAP
SNAP	PF14938	359 - 465	9.3e-21	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0293661
rosa_laevigata	RLG00000011935
rosa_multiflora	Rmu_sc0008436.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174010
rosa_rugosa	Rorug06G0237100.1
rosa_samantha	Rh6AG349800 Rh6BG357300 Rh6CG364100 Rh6DG351000
rosa_wichuraiana	Rw6G030450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	144, 1197
AccBSI	CCGCTC	1 cut(s)	500
AccII	CGCG	2 cut(s)	87, 880
AciI	CCGC	6 cut(s)	216, 219, 380, 498, 1076, 1269
AclWI	GGATC	4 cut(s)	15, 117, 973, 1170
AcoI	YGGCCR	2 cut(s)	884, 1009
AcsI	RAATTY	2 cut(s)	29, 788
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	144, 778, 1197
AflII	CTTAAG	1 cut(s)	1037
AflIII	ACRYGT	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	1003
AjnI	CCWGG	3 cut(s)	143, 723, 1196
Alw21I	GWGCWC	2 cut(s)	447, 966
Alw44I	GTGCAC	1 cut(s)	962
AlwI	GGATC	4 cut(s)	15, 117, 973, 1170
AlwNI	CAGNNNCTG	1 cut(s)	636
AoxI	GGCC	5 cut(s)	534, 618, 884, 1009, 1326
ApaLI	GTGCAC	1 cut(s)	962
ApoI	RAATTY	2 cut(s)	29, 788
Asp700I	GAANNNNTTC	1 cut(s)	788
AsuC2I	CCSGG	2 cut(s)	983, 1385
AsuHPI	GGTGA	2 cut(s)	793, 944
AsuII	TTCGAA	2 cut(s)	429, 863
BaeGI	GKGCMC	2 cut(s)	966, 1002
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	200, 1253
Bbv12I	GWGCWC	2 cut(s)	447, 966
BccI	CCATC	3 cut(s)	57, 83, 1106
BceAI	ACGGC	2 cut(s)	899, 1024
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	3 cut(s)	145, 725, 1198
BclI	TGATCA	1 cut(s)	1060
BcnI	CCSGG	2 cut(s)	983, 1385
BfaI	CTAG	6 cut(s)	18, 287, 912, 942, 1209, 1340
BfmI	CTRYAG	3 cut(s)	637, 654, 991
BfrI	CTTAAG	1 cut(s)	1037
Bme1390I	CCNGG	5 cut(s)	145, 725, 983, 1198, 1385
BmgBI	CACGTC	1 cut(s)	1003
BmiI	GGNNCC	2 cut(s)	79, 1132
BmrFI	CCNGG	5 cut(s)	145, 725, 983, 1198, 1385
BmsI	GCATC	3 cut(s)	446, 616, 1279
BpiI	GAAGAC	2 cut(s)	200, 1253
BpmI	CTGGAG	1 cut(s)	746
Bpu14I	TTCGAA	2 cut(s)	429, 863
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	983, 1385
BsaBI	GATNNNNATC	1 cut(s)	687
BsaJI	CCNNGG	3 cut(s)	144, 531, 723
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 778, 1197
Bse118I	RCCGGY	1 cut(s)	966
Bse1I	ACTGG	2 cut(s)	481, 813
Bse3DI	GCAATG	2 cut(s)	244, 669
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	145, 725, 1198
BseDI	CCNNGG	3 cut(s)	144, 531, 723
BseGI	GGATG	3 cut(s)	68, 1063, 1117
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	3 cut(s)	144, 778, 1197
BseMI	GCAATG	2 cut(s)	244, 669
BseMII	CTCAG	3 cut(s)	432, 527, 1043
BseNI	ACTGG	2 cut(s)	481, 813
BseRI	GAGGAG	2 cut(s)	657, 860
BseSI	GKGCMC	2 cut(s)	966, 1002
BsgI	GTGCAG	3 cut(s)	225, 342, 1278
Bsh1236I	CGCG	2 cut(s)	87, 880
BshFI	GGCC	5 cut(s)	536, 620, 886, 1011, 1328
BsiHKAI	GWGCWC	2 cut(s)	447, 966
BsiSI	CCGG	5 cut(s)	318, 621, 967, 983, 1385
BslFI	GGGAC	1 cut(s)	1134
BslI	CCNNNNNNNGG	3 cut(s)	144, 778, 1197
BsmFI	GGGAC	1 cut(s)	1134
BsnI	GGCC	5 cut(s)	536, 620, 886, 1011, 1328
Bsp119I	TTCGAA	2 cut(s)	429, 863
Bsp1286I	GDGCHC	3 cut(s)	447, 966, 1002
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	7, 109, 978, 1060, 1162
BspACI	CCGC	6 cut(s)	216, 219, 380, 498, 1076, 1269
BspANI	GGCC	5 cut(s)	536, 620, 886, 1011, 1328
BspCNI	CTCAG	3 cut(s)	433, 526, 1042
BspFNI	CGCG	2 cut(s)	87, 880
BspLI	GGNNCC	2 cut(s)	79, 1132
BspMAI	CTGCAG	2 cut(s)	641, 658
BspPI	GGATC	4 cut(s)	15, 117, 973, 1170
BspT104I	TTCGAA	2 cut(s)	429, 863
BspTI	CTTAAG	1 cut(s)	1037
BsrBI	CCGCTC	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	244, 669
BsrFI	RCCGGY	1 cut(s)	966
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	481, 813
BssAI	RCCGGY	1 cut(s)	966
BssECI	CCNNGG	3 cut(s)	144, 531, 723
BssMI	GATC	5 cut(s)	7, 109, 978, 1060, 1162
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	3 cut(s)	145, 725, 1198
Bst4CI	ACNGT	2 cut(s)	105, 1158
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	165
BstBI	TTCGAA	2 cut(s)	429, 863
BstC8I	GCNNGC	3 cut(s)	361, 584, 632
BstDEI	CTNAG	3 cut(s)	441, 513, 1029
BstF5I	GGATG	3 cut(s)	68, 1063, 1117
BstFNI	CGCG	2 cut(s)	87, 880
BstKTI	GATC	5 cut(s)	10, 112, 981, 1063, 1165
BstMBI	GATC	5 cut(s)	7, 109, 978, 1060, 1162
BstMWI	GCNNNNNNNGC	6 cut(s)	224, 506, 636, 659, 947, 1277
BstNI	CCWGG	3 cut(s)	145, 725, 1198
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	5 cut(s)	143, 723, 981, 1196, 1383
BstSFI	CTRYAG	3 cut(s)	637, 654, 991
BstSLI	GKGCMC	2 cut(s)	966, 1002
BstUI	CGCG	2 cut(s)	87, 880
BstV2I	GAAGAC	2 cut(s)	200, 1253
BstX2I	RGATCY	1 cut(s)	978
BstXI	CCANNNNNNTGG	1 cut(s)	1159
BstYI	RGATCY	1 cut(s)	978
BsuRI	GGCC	5 cut(s)	536, 620, 886, 1011, 1328
BtgZI	GCGATG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	1003
BtsCI	GGATG	3 cut(s)	68, 1063, 1117
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	3 cut(s)	488, 719, 806
Cac8I	GCNNGC	3 cut(s)	361, 584, 632
CaiI	CAGNNNCTG	1 cut(s)	636
Cfr10I	RCCGGY	1 cut(s)	966
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	166
CspCI	CAANNNNNGTGG	6 cut(s)	211, 246, 910, 945, 1264, 1299
CviAII	CATG	7 cut(s)	59, 113, 209, 342, 708, 766, 816
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	441, 513, 1029
DpnI	GATC	5 cut(s)	9, 111, 980, 1062, 1164
DpnII	GATC	5 cut(s)	7, 109, 978, 1060, 1162
EaeI	YGGCCR	2 cut(s)	884, 1009
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	143, 723, 1196
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	7 cut(s)	62, 116, 212, 345, 711, 769, 819
FaqI	GGGAC	1 cut(s)	1134
FatI	CATG	7 cut(s)	58, 112, 208, 341, 707, 765, 815
FbaI	TGATCA	1 cut(s)	1060
FokI	GGATG	3 cut(s)	75, 1070, 1124
FriOI	GRGCYC	1 cut(s)	447
FspBI	CTAG	6 cut(s)	18, 287, 912, 942, 1209, 1340
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	5 cut(s)	536, 620, 886, 1011, 1328
HapII	CCGG	5 cut(s)	318, 621, 967, 983, 1385
HgaI	GACGC	1 cut(s)	659
Hin1II	CATG	7 cut(s)	62, 116, 212, 345, 711, 769, 819
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	3 cut(s)	297, 392, 812
HpaII	CCGG	5 cut(s)	318, 621, 967, 983, 1385
HphI	GGTGA	2 cut(s)	793, 944
Hpy166II	GTNNAC	3 cut(s)	478, 964, 1006
Hpy188I	TCNGA	4 cut(s)	442, 516, 1032, 1373
Hpy188III	TCNNGA	4 cut(s)	287, 311, 701, 1340
Hpy8I	GTNNAC	3 cut(s)	478, 964, 1006
Hpy99I	CGWCG	2 cut(s)	257, 885
HpyAV	CCTTC	5 cut(s)	317, 406, 459, 778, 1368
HpyCH4III	ACNGT	2 cut(s)	105, 1158
HpyCH4IV	ACGT	3 cut(s)	255, 754, 1002
HpyF10VI	GCNNNNNNNGC	6 cut(s)	224, 506, 636, 659, 947, 1277
HpyF3I	CTNAG	3 cut(s)	441, 513, 1029
HpySE526I	ACGT	3 cut(s)	255, 754, 1002
Hsp92II	CATG	7 cut(s)	62, 116, 212, 345, 711, 769, 819
Ksp22I	TGATCA	1 cut(s)	1060
Kzo9I	GATC	5 cut(s)	7, 109, 978, 1060, 1162
LmnI	GCTCC	2 cut(s)	450, 920
LweI	GCATC	3 cut(s)	446, 616, 1279
MaeI	CTAG	6 cut(s)	18, 287, 912, 942, 1209, 1340
MaeII	ACGT	3 cut(s)	255, 754, 1002
MaeIII	GTNAC	3 cut(s)	256, 563, 755
MalI	GATC	5 cut(s)	9, 111, 980, 1062, 1164
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	5 cut(s)	7, 109, 978, 1060, 1162
MboII	GAAGA	4 cut(s)	205, 418, 968, 1258
MflI	RGATCY	1 cut(s)	978
MhlI	GDGCHC	3 cut(s)	447, 966, 1002
MluCI	AATT	6 cut(s)	29, 375, 461, 788, 1082, 1225
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	3 cut(s)	87, 1089, 1140
MnlI	CCTC	7 cut(s)	133, 265, 635, 721, 838, 1318, 1370
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	5 cut(s)	234, 600, 747, 1038, 1380
MslI	CAYNNNNRTG	2 cut(s)	712, 1143
MspA1I	CMGCKG	2 cut(s)	335, 1271
MspCI	CTTAAG	1 cut(s)	1037
MspI	CCGG	5 cut(s)	318, 621, 967, 983, 1385
MspR9I	CCNGG	5 cut(s)	145, 725, 983, 1198, 1385
MvaI	CCWGG	3 cut(s)	145, 725, 1198
MvnI	CGCG	2 cut(s)	87, 880
MwoI	GCNNNNNNNGC	6 cut(s)	224, 506, 636, 659, 947, 1277
NciI	CCSGG	2 cut(s)	983, 1385
NdeII	GATC	5 cut(s)	7, 109, 978, 1060, 1162
NlaIII	CATG	7 cut(s)	62, 116, 212, 345, 711, 769, 819
NlaIV	GGNNCC	2 cut(s)	79, 1132
NmuCI	GTSAC	1 cut(s)	755
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	2 cut(s)	429, 863
PciI	ACATGT	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	2 cut(s)	392, 812
PflMI	CCANNNNNTGG	2 cut(s)	144, 1197
PfoI	TCCNGGA	1 cut(s)	981
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	143, 723, 1196
PspGI	CCWGG	3 cut(s)	143, 723, 1196
PspN4I	GGNNCC	2 cut(s)	79, 1132
PsrI	GAACNNNNNNTAC	2 cut(s)	470, 502
PstI	CTGCAG	2 cut(s)	641, 658
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	978
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	712, 1143
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	5 cut(s)	234, 600, 747, 1038, 1380
Sau3AI	GATC	5 cut(s)	7, 109, 978, 1060, 1162
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	5 cut(s)	145, 725, 983, 1198, 1385
SduI	GDGCHC	3 cut(s)	447, 966, 1002
SfaNI	GCATC	3 cut(s)	446, 616, 1279
SfcI	CTRYAG	3 cut(s)	637, 654, 991
SfuI	TTCGAA	2 cut(s)	429, 863
SmiMI	CAYNNNNRTG	2 cut(s)	712, 1143
SmlI	CTYRAG	2 cut(s)	587, 1037
SmoI	CTYRAG	2 cut(s)	587, 1037
Sse9I	AATT	6 cut(s)	29, 375, 461, 788, 1082, 1225
SsiI	CCGC	6 cut(s)	216, 219, 380, 498, 1076, 1269
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	6 cut(s)	18, 287, 912, 942, 1209, 1340
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	5 cut(s)	143, 723, 981, 1196, 1383
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	105, 1158
TaiI	ACGT	3 cut(s)	258, 757, 1005
TaqI	TCGA	4 cut(s)	300, 312, 429, 863
TasI	AATT	6 cut(s)	29, 375, 461, 788, 1082, 1225
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	4 cut(s)	218, 221, 500, 1271
TfiI	GAWTC	2 cut(s)	392, 812
Tru1I	TTAA	5 cut(s)	234, 600, 747, 1038, 1380
Tru9I	TTAA	5 cut(s)	234, 600, 747, 1038, 1380
TscAI	CASTG	3 cut(s)	488, 719, 813
TseFI	GTSAC	1 cut(s)	755
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	4 cut(s)	47, 225, 405, 804
TspGWI	ACGGA	3 cut(s)	463, 761, 859
TspRI	CASTG	3 cut(s)	488, 719, 813
Van91I	CCANNNNNTGG	2 cut(s)	144, 1197
Vha464I	CTTAAG	1 cut(s)	1037
VneI	GTGCAC	1 cut(s)	962
XapI	RAATTY	2 cut(s)	29, 788
XbaI	TCTAGA	2 cut(s)	286, 1339
XceI	RCATGY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	6 cut(s)	18, 287, 912, 942, 1209, 1340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.