Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018623

Physical Location & Seq

Genomic Coordinates Forward (+)

13910834 .. 13914079

Gene Structure 3246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGGATCATATTGCTAGAGCAGAGAAATTTGAAAAGAAAGCAAATAAGAAGCTTCATGGATGGAGAGTTTTTGGTTCCAAACGCGATGATATTGCCGAATTGTTGGATCATGCTGCAACCTCTTACAAACTCGCCAAAGCCTGGGATAAAGCGAAAGAAATGTACATCAAGTTGGCAAAGCATCATTTGAAGACCAAAACAGGACATGAAGCCGCCGCCACAGCTTTTGTTGATGCTGCACATTGCTGCGACATAACATCTGTTGATGAGGCCATTTCTTGTCTAGAGCAGGGAGTCGATTACCTTCTCGATACCGGAAAGTTCAATGCAGCTGCAACATGTTTTGACAAAGCTGCAAGCTTGTATAAGGAAATTGCGGAACTATATGAATTCCAAGAGAATATTGAGAAGGCTATTGAGTTCTTCGAAAAGGCATCTGAGCTCCCTTTAAATGAAGAATTATCAAGTTCCGTGAACCAGTGCTATGAGAAAGCCGCTCAACTTGCTGCTCAGATTGAGCAATATCCCAAGGCCATTGAAATCTACGAAAATATGGCGAGTTACTCGCTCAACAACAGCTTGCTCAAGCACAAAGTTAAGGGGCATCTTTTCAAGGCCGGAATATGCAGGCTCTGCAGAGGAGATGACGCTGCAGTTGCAATGGCCAAGCAATACGCAGATTCATATCCAAGTTTTCGTGATACATGGCAGTGCAAATCCCTGGAGGATATAGCAGTTTCAGTTGATAAACGTGACCTTACCACGTTCCGTGATGTGGTGAAGGAATTCGAAAGTATGACACCACTGGATTCATGGACAGCCAACTTGCTGTTGAGAGTGGAGGAGAAGCTGAAAGCTTCAAAGTCCGTAAGAACGCGACGGCCAACCAAGGCGTTAGACTTGAAACCCAGCTCCACCACTACATTTGGTGATAAGAGGCAAGCAAAGGAAGATGTGCACTGGCTTGGAAAGATCCCGGACGACTATAGGGGGCACGTCAACGGTGACTGGAAAAAGCAAACAAGAAGTTGGAGGGTTGGGGACTTATTGGTTCCAAACACAAATGATGTTGCCAAACTCTTGGATCAAGCTGCCAATTCTTACAAACTCGCCAAATCCTGGCATAAAGCTAGAGAAACATATATCAATTTGGCAATACATCGTTTGAAGACCAAAACCAAAGTTGAAGCCACTGCCACAGCTTTTGTTGATGCTGCACATTGCTACGATATAACATCTGTTGATGAGGCCATTGATTGTCTAGAGCGGAGTCGATTACCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

430

Amino Acids

48.56

Weight (kDa)

7.57

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	7 - 285	3.2e-72	Soluble NSF attachment protein, SNAP
SNAP	PF14938	356 - 424	7.1e-13	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0293661
rosa_laevigata	RLG00000011935
rosa_multiflora	Rmu_sc0008436.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174010
rosa_rugosa	Rorug06G0237100.1
rosa_samantha	Rh6AG349800 Rh6BG357300 Rh6CG364100 Rh6DG351000
rosa_wichuraiana	Rw6G030450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	144, 1122
AccBSI	CCGCTC	2 cut(s)	500, 1270
AccII	CGCG	2 cut(s)	87, 880
AciI	CCGC	5 cut(s)	216, 219, 380, 498, 1270
AclWI	GGATC	4 cut(s)	15, 117, 970, 1095
AcoI	YGGCCR	2 cut(s)	666, 884
AcsI	RAATTY	3 cut(s)	29, 392, 788
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	144, 778, 1122
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	9 cut(s)	35, 193, 328, 542, 616, 864, 907, 1171, 1190
AjiI	CACGTC	1 cut(s)	1000
AjnI	CCWGG	3 cut(s)	143, 723, 1121
Alw21I	GWGCWC	2 cut(s)	447, 963
Alw44I	GTGCAC	1 cut(s)	959
AlwI	GGATC	4 cut(s)	15, 117, 970, 1095
AlwNI	CAGNNNCTG	1 cut(s)	636
AoxI	GGCC	6 cut(s)	273, 534, 618, 666, 884, 1251
ApaLI	GTGCAC	1 cut(s)	959
ApoI	RAATTY	3 cut(s)	29, 392, 788
Asp700I	GAANNNNTTC	1 cut(s)	788
AsuC2I	CCSGG	1 cut(s)	980
AsuHPI	GGTGA	3 cut(s)	793, 944, 1019
AsuII	TTCGAA	2 cut(s)	429, 792
BaeGI	GKGCMC	2 cut(s)	963, 999
BalI	TGGCCA	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	200, 1178
Bbv12I	GWGCWC	2 cut(s)	447, 963
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	899
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	3 cut(s)	145, 725, 1123
BcnI	CCSGG	1 cut(s)	980
BfaI	CTAG	4 cut(s)	18, 287, 1134, 1265
BfmI	CTRYAG	3 cut(s)	637, 654, 988
Bme1390I	CCNGG	4 cut(s)	145, 725, 980, 1123
BmgBI	CACGTC	1 cut(s)	1000
BmiI	GGNNCC	2 cut(s)	79, 1056
BmrFI	CCNGG	4 cut(s)	145, 725, 980, 1123
BmsI	GCATC	5 cut(s)	193, 226, 446, 616, 1204
BpiI	GAAGAC	2 cut(s)	200, 1178
BpmI	CTGGAG	1 cut(s)	746
Bpu14I	TTCGAA	2 cut(s)	429, 792
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	687
BsaJI	CCNNGG	4 cut(s)	144, 531, 723, 891
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 778, 1122
Bse1I	ACTGG	4 cut(s)	481, 813, 968, 1016
Bse3DI	GCAATG	3 cut(s)	244, 669, 1222
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	145, 725, 1123
BseDI	CCNNGG	4 cut(s)	144, 531, 723, 891
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	3 cut(s)	144, 778, 1122
BseMI	GCAATG	3 cut(s)	244, 669, 1222
BseMII	CTCAG	2 cut(s)	432, 527
BseNI	ACTGG	4 cut(s)	481, 813, 968, 1016
BseRI	GAGGAG	2 cut(s)	657, 860
BseSI	GKGCMC	2 cut(s)	963, 999
BseYI	CCCAGC	1 cut(s)	911
BsgI	GTGCAG	2 cut(s)	225, 1203
Bsh1236I	CGCG	2 cut(s)	87, 880
BshFI	GGCC	6 cut(s)	275, 536, 620, 668, 886, 1253
BsiHKAI	GWGCWC	2 cut(s)	447, 963
BsiSI	CCGG	3 cut(s)	318, 621, 980
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	3 cut(s)	144, 778, 1122
BsmFI	GGGAC	1 cut(s)	1058
BsnI	GGCC	6 cut(s)	275, 536, 620, 668, 886, 1253
Bsp119I	TTCGAA	2 cut(s)	429, 792
Bsp1286I	GDGCHC	3 cut(s)	447, 963, 999
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	7, 109, 975, 1087
BspACI	CCGC	5 cut(s)	216, 219, 380, 498, 1270
BspANI	GGCC	6 cut(s)	275, 536, 620, 668, 886, 1253
BspCNI	CTCAG	2 cut(s)	433, 526
BspFNI	CGCG	2 cut(s)	87, 880
BspLI	GGNNCC	2 cut(s)	79, 1056
BspMAI	CTGCAG	2 cut(s)	641, 658
BspPI	GGATC	4 cut(s)	15, 117, 970, 1095
BspT104I	TTCGAA	2 cut(s)	429, 792
BsrBI	CCGCTC	2 cut(s)	500, 1270
BsrDI	GCAATG	3 cut(s)	244, 669, 1222
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	4 cut(s)	481, 813, 968, 1016
BssECI	CCNNGG	4 cut(s)	144, 531, 723, 891
BssMI	GATC	4 cut(s)	7, 109, 975, 1087
BssT1I	CCWWGG	2 cut(s)	531, 891
Bst2UI	CCWGG	3 cut(s)	145, 725, 1123
Bst4CI	ACNGT	1 cut(s)	1007
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	165
BstBI	TTCGAA	2 cut(s)	429, 792
BstC8I	GCNNGC	4 cut(s)	361, 584, 632, 945
BstDEI	CTNAG	2 cut(s)	441, 513
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	2 cut(s)	87, 880
BstKTI	GATC	4 cut(s)	10, 112, 978, 1090
BstMBI	GATC	4 cut(s)	7, 109, 975, 1087
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 506, 636, 659
BstNI	CCWGG	3 cut(s)	145, 725, 1123
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	4 cut(s)	143, 723, 978, 1121
BstSFI	CTRYAG	3 cut(s)	637, 654, 988
BstSLI	GKGCMC	2 cut(s)	963, 999
BstUI	CGCG	2 cut(s)	87, 880
BstV2I	GAAGAC	2 cut(s)	200, 1178
BstX2I	RGATCY	1 cut(s)	975
BstXI	CCANNNNNNTGG	1 cut(s)	1084
BstYI	RGATCY	1 cut(s)	975
BsuRI	GGCC	6 cut(s)	275, 536, 620, 668, 886, 1253
BtgZI	GCGATG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	1000
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	2 cut(s)	719, 1194
BtsIMutI	CAGTG	5 cut(s)	488, 719, 806, 961, 1194
Cac8I	GCNNGC	4 cut(s)	361, 584, 632, 945
CaiI	CAGNNNCTG	1 cut(s)	636
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	166
CspCI	CAANNNNNGTGG	6 cut(s)	211, 246, 910, 945, 1189, 1224
CviAII	CATG	6 cut(s)	59, 113, 209, 342, 708, 816
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	441, 513
DpnI	GATC	4 cut(s)	9, 111, 977, 1089
DpnII	GATC	4 cut(s)	7, 109, 975, 1087
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	2 cut(s)	666, 884
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	2 cut(s)	531, 891
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	445
EcoRI	GAATTC	2 cut(s)	392, 788
EcoRII	CCWGG	3 cut(s)	143, 723, 1121
EcoT14I	CCWWGG	2 cut(s)	531, 891
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	531, 891
FaeI	CATG	6 cut(s)	62, 116, 212, 345, 711, 819
FaqI	GGGAC	1 cut(s)	1058
FatI	CATG	6 cut(s)	58, 112, 208, 341, 707, 815
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	447
FspBI	CTAG	4 cut(s)	18, 287, 1134, 1265
GsaI	CCCAGC	1 cut(s)	915
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	6 cut(s)	275, 536, 620, 668, 886, 1253
HapII	CCGG	3 cut(s)	318, 621, 980
HgaI	GACGC	1 cut(s)	659
Hin1II	CATG	6 cut(s)	62, 116, 212, 345, 711, 819
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	3 cut(s)	53, 361, 858
HinfI	GANTC	4 cut(s)	297, 683, 812, 1273
HpaII	CCGG	3 cut(s)	318, 621, 980
HphI	GGTGA	3 cut(s)	793, 944, 1019
Hpy166II	GTNNAC	3 cut(s)	478, 961, 1003
Hpy188I	TCNGA	2 cut(s)	442, 516
Hpy188III	TCNNGA	4 cut(s)	287, 311, 701, 1265
Hpy8I	GTNNAC	3 cut(s)	478, 961, 1003
Hpy99I	CGWCG	1 cut(s)	885
HpyAV	CCTTC	3 cut(s)	317, 406, 778
HpyCH4III	ACNGT	1 cut(s)	1007
HpyCH4IV	ACGT	3 cut(s)	754, 767, 999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 506, 636, 659
HpyF3I	CTNAG	2 cut(s)	441, 513
HpySE526I	ACGT	3 cut(s)	754, 767, 999
Hsp92II	CATG	6 cut(s)	62, 116, 212, 345, 711, 819
Kzo9I	GATC	4 cut(s)	7, 109, 975, 1087
LmnI	GCTCC	2 cut(s)	450, 920
LweI	GCATC	5 cut(s)	193, 226, 446, 616, 1204
MaeI	CTAG	4 cut(s)	18, 287, 1134, 1265
MaeII	ACGT	3 cut(s)	754, 767, 999
MaeIII	GTNAC	3 cut(s)	563, 755, 1007
MalI	GATC	4 cut(s)	9, 111, 977, 1089
MbiI	CCGCTC	2 cut(s)	500, 1270
MboI	GATC	4 cut(s)	7, 109, 975, 1087
MboII	GAAGA	5 cut(s)	205, 418, 470, 965, 1183
MflI	RGATCY	1 cut(s)	975
MhlI	GDGCHC	3 cut(s)	447, 963, 999
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	8 cut(s)	29, 101, 375, 392, 461, 788, 1099, 1150
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	2 cut(s)	306, 1282
MmeI	TCCRAC	2 cut(s)	87, 1013
MnlI	CCTC	8 cut(s)	133, 265, 635, 721, 838, 933, 1029, 1243
Mox20I	TGGCCA	1 cut(s)	668
MroXI	GAANNNNTTC	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	2 cut(s)	452, 600
MslI	CAYNNNNRTG	1 cut(s)	712
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	3 cut(s)	318, 621, 980
MspR9I	CCNGG	4 cut(s)	145, 725, 980, 1123
MvaI	CCWGG	3 cut(s)	145, 725, 1123
MvnI	CGCG	2 cut(s)	87, 880
MwoI	GCNNNNNNNGC	4 cut(s)	224, 506, 636, 659
NciI	CCSGG	1 cut(s)	980
NdeII	GATC	4 cut(s)	7, 109, 975, 1087
NlaIII	CATG	6 cut(s)	62, 116, 212, 345, 711, 819
NlaIV	GGNNCC	2 cut(s)	79, 1056
NmuCI	GTSAC	2 cut(s)	755, 1007
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	2 cut(s)	429, 792
PciI	ACATGT	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	2 cut(s)	683, 812
PflMI	CCANNNNNTGG	2 cut(s)	144, 1122
PfoI	TCCNGGA	1 cut(s)	978
PleI	GAGTC	2 cut(s)	305, 1281
PpsI	GAGTC	2 cut(s)	305, 1281
PscI	ACATGT	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	143, 723, 1121
PspFI	CCCAGC	1 cut(s)	911
PspGI	CCWGG	3 cut(s)	143, 723, 1121
PspN4I	GGNNCC	2 cut(s)	79, 1056
PstI	CTGCAG	2 cut(s)	641, 658
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	975
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	712
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	452, 600
Sau3AI	GATC	4 cut(s)	7, 109, 975, 1087
SchI	GAGTC	2 cut(s)	306, 1282
ScrFI	CCNGG	4 cut(s)	145, 725, 980, 1123
SduI	GDGCHC	3 cut(s)	447, 963, 999
SfaNI	GCATC	5 cut(s)	193, 226, 446, 616, 1204
SfcI	CTRYAG	3 cut(s)	637, 654, 988
SfuI	TTCGAA	2 cut(s)	429, 792
SmiMI	CAYNNNNRTG	1 cut(s)	712
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	8 cut(s)	29, 101, 375, 392, 461, 788, 1099, 1150
SsiI	CCGC	5 cut(s)	216, 219, 380, 498, 1270
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	4 cut(s)	18, 287, 1134, 1265
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	4 cut(s)	143, 723, 978, 1121
StyI	CCWWGG	2 cut(s)	531, 891
TaaI	ACNGT	1 cut(s)	1007
TaiI	ACGT	3 cut(s)	757, 770, 1002
TaqI	TCGA	5 cut(s)	300, 312, 429, 792, 1276
TasI	AATT	8 cut(s)	29, 101, 375, 392, 461, 788, 1099, 1150
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	3 cut(s)	218, 221, 500
TfiI	GAWTC	2 cut(s)	683, 812
Tru1I	TTAA	2 cut(s)	452, 600
Tru9I	TTAA	2 cut(s)	452, 600
TscAI	CASTG	5 cut(s)	488, 719, 813, 968, 1201
TseFI	GTSAC	2 cut(s)	755, 1007
Tsp45I	GTSAC	2 cut(s)	755, 1007
TspDTI	ATGAA	6 cut(s)	47, 225, 405, 471, 675, 804
TspGWI	ACGGA	3 cut(s)	463, 761, 859
TspRI	CASTG	5 cut(s)	488, 719, 813, 968, 1201
Van91I	CCANNNNNTGG	2 cut(s)	144, 1122
VneI	GTGCAC	1 cut(s)	959
XapI	RAATTY	3 cut(s)	29, 392, 788
XbaI	TCTAGA	2 cut(s)	286, 1264
XceI	RCATGY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	4 cut(s)	18, 287, 1134, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.