Rroxscaffold_7G00174010

Alpha-soluble nsf attachment protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
13832929 .. 13834134
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174010.1

Sequence Viewer

Length: 1206 bp
ATGGAGGATCATATTGCTAGAGCAGAGAAATTGGAAAAGAAAGCAAACAAGAAGCTTCATGGATGGAGAGTTTTTGGTTCCAAACGCGATGATATTGCCAGACTGTTGGATCATGCAGCCACCTCTTACAAACTCGCCAAAGCCTGGGATAAAGCGAAAGAAATGTACATCAAGTTGGCAAAGCATCATTTGAAGACCAAAACCGAACATAAAGCCGCCGCCACAGCTTTTGTTGATGCTGCACATTGCTGCGACAAAACATCTGTTGATGAGGTCATTTCTTGTCTAGAGCAGGGAGTCGATTACCTTCTCGATACCGGAAAGTTCAATGCAGCTGCAACATGGTCTGACAAAGCTGCACGCTTGTGTAAGGAAATTGCGGAACTATATGAATCACAAGAGAATATTGAGAAGGCTATTGAGTTCTTTGAAAAGGCATCTGAGCTCCCTTTAAATGAAGAATTATCAAGTTCCGTGAACCAGTGCTATGAGAAAGCCGCTCAACTTGCTGCTCAGATTGGGCAATATCCCAAGGCCATTGAAATCTACGAAAATATGGCGAGTTACTCGCTCAACCACAGCTTGCTCAAGCACAAAGTTAAGGGGCATCTTTTCAAGGCCGGAATATGCAGGCTCTGCAGAGGAGATGCTGCAGTTGCAATGGCCAAGCAATACGCAGATTCATATCCAAGTTTTCGTGATACATGGCAGTGCAAATCCCTGGAGGAAATAGCAGTTTCAGTTGATAAACGTAACCTGACCACGTTCCGTGATGTGGTGAAGGAATTCGAAAGTATGACACCACTGGATTCATGGACAACCAACTTGCTGTTGAGAGTGGAGGAGAAGCTGAAAGCTTCGAAGTCCGTGAGAACGCGACGGCCAACCAAGGCGTTAGACTTGAAACCTAGCTCCACCACTACATTTGGTGATAGAGGGAAGCAAAGGAAGATGTGCACCGGCTTGGAAAGATCCCGGACCACTATAGGGGGCACGTCAACGGCGACAGGAAGTAAACTCTTGTGGTCTAGCTTAAGGATCAAAACCGGTGTTGATACAAGCAAGGAGAAGATCAGGAATATGGGAGATCGAGATGCCTCTGACGAATTGACCGTTCCTTGCAGAGACCTTCAGAGACGAGCCTTCTTAGTGGCCGGCCAAATGTCCTCCATAAGGGACTTACCTTCAAAAGAAGCTTGCATGTGA

Protein Analysis

401

Amino Acids

45.06

Weight (kDa)

9.1

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAP PF14938 7 - 284 1.7e-71 Soluble NSF attachment protein, SNAP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018623)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293661
rosa_laevigata RLG00000011935
rosa_multiflora Rmu_sc0008436.1_g000004
rosa_roxburghii Rroxscaffold_7G00174010
rosa_rugosa Rorug06G0237100.1
rosa_samantha Rh6AG349800 Rh6BG357300 Rh6CG364100 Rh6DG351000
rosa_wichuraiana Rw6G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 500
AccII CGCG 2 cut(s) 87, 877
AciI CCGC 4 cut(s) 216, 219, 380, 498
AclWI GGATC 4 cut(s) 15, 117, 966, 1046
AcoI YGGCCR 4 cut(s) 663, 881, 1152, 1156
AcsI RAATTY 1 cut(s) 785
AcuI CTGAAG 1 cut(s) 1115
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 4 cut(s) 144, 775, 987, 1173
AflII CTTAAG 1 cut(s) 1033
AgeI ACCGGT 1 cut(s) 1046
AgsI TTSAA 7 cut(s) 193, 328, 431, 542, 616, 904, 1188
AjiI CACGTC 1 cut(s) 996
AjnI CCWGG 2 cut(s) 143, 720
AleI CACNNNNGTG 1 cut(s) 364
Alw21I GWGCWC 2 cut(s) 447, 959
Alw26I GTCTC 2 cut(s) 1119, 1129
Alw44I GTGCAC 1 cut(s) 955
AlwI GGATC 4 cut(s) 15, 117, 966, 1046
AlwNI CAGNNNCTG 1 cut(s) 636
AoxI GGCC 6 cut(s) 534, 618, 663, 881, 1152, 1156
ApaLI GTGCAC 1 cut(s) 955
ApeKI GCWGC 8 cut(s) 116, 239, 249, 332, 335, 356, 509, 650
ApoI RAATTY 1 cut(s) 785
AsiGI ACCGGT 1 cut(s) 1046
Asp700I GAANNNNTTC 1 cut(s) 785
AspS9I GGNCC 1 cut(s) 978
AsuC2I CCSGG 1 cut(s) 976
AsuHPI GGTGA 2 cut(s) 790, 941
AsuII TTCGAA 2 cut(s) 789, 860
AvaII GGWCC 1 cut(s) 978
BaeGI GKGCMC 2 cut(s) 959, 995
BalI TGGCCA 1 cut(s) 665
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 447, 959
BbvI GCAGC 8 cut(s) 128, 226, 236, 322, 343, 344, 496, 637
BccI CCATC 1 cut(s) 57
BceAI ACGGC 2 cut(s) 896, 1017
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 2 cut(s) 145, 722
BcnI CCSGG 1 cut(s) 976
BcoDI GTCTC 2 cut(s) 1119, 1129
BfaI CTAG 4 cut(s) 18, 287, 909, 1029
BfmI CTRYAG 3 cut(s) 637, 651, 984
BfrI CTTAAG 1 cut(s) 1033
Bme1390I CCNGG 3 cut(s) 145, 722, 976
Bme18I GGWCC 1 cut(s) 978
BmgBI CACGTC 1 cut(s) 996
BmgT120I GGNCC 1 cut(s) 978
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 3 cut(s) 145, 722, 976
BmsI GCATC 6 cut(s) 193, 226, 446, 616, 637, 1084
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 743
Bpu14I TTCGAA 2 cut(s) 789, 860
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 976
BsaBI GATNNNNATC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 1119
BsaJI CCNNGG 4 cut(s) 144, 531, 720, 888
BsaWI WCCGGW 2 cut(s) 317, 1046
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 775, 987, 1173
Bse118I RCCGGY 3 cut(s) 959, 1046, 1154
Bse1I ACTGG 2 cut(s) 481, 810
Bse3DI GCAATG 2 cut(s) 244, 666
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 2 cut(s) 145, 722
BseDI CCNNGG 4 cut(s) 144, 531, 720, 888
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 4 cut(s) 144, 775, 987, 1173
BseMI GCAATG 2 cut(s) 244, 666
BseMII CTCAG 2 cut(s) 432, 527
BseNI ACTGG 2 cut(s) 481, 810
BseRI GAGGAG 2 cut(s) 657, 857
BseSI GKGCMC 2 cut(s) 959, 995
BseXI GCAGC 8 cut(s) 128, 226, 236, 322, 343, 344, 496, 637
BsgI GTGCAG 2 cut(s) 225, 342
Bsh1236I CGCG 2 cut(s) 87, 877
BshFI GGCC 6 cut(s) 536, 620, 665, 883, 1154, 1158
BshTI ACCGGT 1 cut(s) 1046
BsiHKAI GWGCWC 2 cut(s) 447, 959
BsiSI CCGG 6 cut(s) 318, 621, 960, 976, 1047, 1155
BslFI GGGAC 1 cut(s) 1190
BslI CCNNNNNNNGG 4 cut(s) 144, 775, 987, 1173
BsmAI GTCTC 2 cut(s) 1119, 1129
BsmBI CGTCTC 1 cut(s) 1129
BsmFI GGGAC 1 cut(s) 1190
BsnI GGCC 6 cut(s) 536, 620, 665, 883, 1154, 1158
Bso31I GGTCTC 1 cut(s) 1119
Bsp119I TTCGAA 2 cut(s) 789, 860
Bsp1286I GDGCHC 3 cut(s) 447, 959, 995
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
BspACI CCGC 4 cut(s) 216, 219, 380, 498
BspANI GGCC 6 cut(s) 536, 620, 665, 883, 1154, 1158
BspCNI CTCAG 2 cut(s) 433, 526
BspFNI CGCG 2 cut(s) 87, 877
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 641, 655
BspPI GGATC 4 cut(s) 15, 117, 966, 1046
BspT104I TTCGAA 2 cut(s) 789, 860
BspTI CTTAAG 1 cut(s) 1033
BspTNI GGTCTC 1 cut(s) 1119
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 2 cut(s) 244, 666
BsrFI RCCGGY 3 cut(s) 959, 1046, 1154
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 481, 810
BssAI RCCGGY 3 cut(s) 959, 1046, 1154
BssECI CCNNGG 4 cut(s) 144, 531, 720, 888
BssMI GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
BssT1I CCWWGG 2 cut(s) 531, 888
Bst2UI CCWGG 2 cut(s) 145, 722
Bst4CI ACNGT 2 cut(s) 105, 1114
BstAFI CTTAAG 1 cut(s) 1033
BstAPI GCANNNNNTGC 1 cut(s) 636
BstAUI TGTACA 1 cut(s) 165
BstBI TTCGAA 2 cut(s) 789, 860
BstC8I GCNNGC 5 cut(s) 361, 584, 632, 1156, 1198
BstDEI CTNAG 3 cut(s) 441, 513, 1147
BstENI CCTNNNNNAGG 1 cut(s) 1171
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 87, 877
BstKTI GATC 6 cut(s) 10, 112, 974, 1041, 1074, 1090
BstMAI GTCTC 2 cut(s) 1119, 1129
BstMBI GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
BstMWI GCNNNNNNNGC 4 cut(s) 224, 506, 636, 656
BstNI CCWGG 2 cut(s) 145, 722
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 3 cut(s) 143, 720, 974
BstSFI CTRYAG 3 cut(s) 637, 651, 984
BstSLI GKGCMC 2 cut(s) 959, 995
BstUI CGCG 2 cut(s) 87, 877
BstV1I GCAGC 8 cut(s) 128, 226, 236, 322, 343, 344, 496, 637
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 971
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 971
BsuRI GGCC 6 cut(s) 536, 620, 665, 883, 1154, 1158
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 996
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 3 cut(s) 488, 716, 803
Cac8I GCNNGC 5 cut(s) 361, 584, 632, 1156, 1198
CaiI CAGNNNCTG 1 cut(s) 636
Cfr10I RCCGGY 3 cut(s) 959, 1046, 1154
Cfr13I GGNCC 1 cut(s) 978
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 1046
CspCI CAANNNNNGTGG 4 cut(s) 211, 246, 907, 942
CviAII CATG 6 cut(s) 59, 113, 342, 705, 813, 1201
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 441, 513, 1147
DpnI GATC 6 cut(s) 9, 111, 973, 1040, 1073, 1089
DpnII GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
DraI TTTAAA 1 cut(s) 453
EaeI YGGCCR 4 cut(s) 663, 881, 1152, 1156
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 531, 888
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 1119
Eco47I GGWCC 1 cut(s) 978
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 1171
EcoRI GAATTC 1 cut(s) 785
EcoRII CCWGG 2 cut(s) 143, 720
EcoT14I CCWWGG 2 cut(s) 531, 888
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 531, 888
Esp3I CGTCTC 1 cut(s) 1129
FaeI CATG 6 cut(s) 62, 116, 345, 708, 816, 1204
FaqI GGGAC 1 cut(s) 1190
FatI CATG 6 cut(s) 58, 112, 341, 704, 812, 1200
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 447
FseI GGCCGGCC 1 cut(s) 1158
FspBI CTAG 4 cut(s) 18, 287, 909, 1029
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 6 cut(s) 536, 620, 665, 883, 1154, 1158
HapII CCGG 6 cut(s) 318, 621, 960, 976, 1047, 1155
Hin1II CATG 6 cut(s) 62, 116, 345, 708, 816, 1204
HincII GTYRAC 1 cut(s) 999
HindII GTYRAC 1 cut(s) 999
HindIII AAGCTT 3 cut(s) 53, 855, 1194
HinfI GANTC 4 cut(s) 297, 392, 680, 809
HpaII CCGG 6 cut(s) 318, 621, 960, 976, 1047, 1155
HphI GGTGA 2 cut(s) 790, 941
Hpy166II GTNNAC 4 cut(s) 478, 957, 999, 1016
Hpy188I TCNGA 5 cut(s) 349, 442, 516, 1102, 1134
Hpy188III TCNNGA 5 cut(s) 287, 311, 698, 1075, 1091
Hpy8I GTNNAC 4 cut(s) 478, 957, 999, 1016
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 6 cut(s) 317, 406, 775, 1139, 1153, 1194
HpyCH4III ACNGT 2 cut(s) 105, 1114
HpyCH4IV ACGT 3 cut(s) 751, 764, 995
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 506, 636, 656
HpyF3I CTNAG 3 cut(s) 441, 513, 1147
HpySE526I ACGT 3 cut(s) 751, 764, 995
Hsp92II CATG 6 cut(s) 62, 116, 345, 708, 816, 1204
KroI GCCGGC 1 cut(s) 1154
KroNI GCCGGC 1 cut(s) 1156
Kzo9I GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
LmnI GCTCC 2 cut(s) 450, 917
Lsp1109I GCAGC 8 cut(s) 128, 226, 236, 322, 343, 344, 496, 637
LweI GCATC 6 cut(s) 193, 226, 446, 616, 637, 1084
MaeI CTAG 4 cut(s) 18, 287, 909, 1029
MaeII ACGT 3 cut(s) 751, 764, 995
MaeIII GTNAC 2 cut(s) 563, 752
MalI GATC 6 cut(s) 9, 111, 973, 1040, 1073, 1089
MbiI CCGCTC 1 cut(s) 500
MboI GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
MboII GAAGA 4 cut(s) 205, 470, 961, 1081
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 3 cut(s) 447, 959, 995
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 5 cut(s) 29, 375, 461, 785, 1106
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 8 cut(s) 133, 265, 635, 718, 835, 929, 1108, 1177
Mox20I TGGCCA 1 cut(s) 665
MroNI GCCGGC 1 cut(s) 1154
MroXI GAANNNNTTC 1 cut(s) 785
MscI TGGCCA 1 cut(s) 665
MseI TTAA 3 cut(s) 452, 600, 1034
MslI CAYNNNNRTG 2 cut(s) 364, 709
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 335
MspCI CTTAAG 1 cut(s) 1033
MspI CCGG 6 cut(s) 318, 621, 960, 976, 1047, 1155
MspR9I CCNGG 3 cut(s) 145, 722, 976
MvaI CCWGG 2 cut(s) 145, 722
MvnI CGCG 2 cut(s) 87, 877
MwoI GCNNNNNNNGC 4 cut(s) 224, 506, 636, 656
NaeI GCCGGC 1 cut(s) 1156
NciI CCSGG 1 cut(s) 976
NdeII GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
NgoMIV GCCGGC 1 cut(s) 1154
NlaIII CATG 6 cut(s) 62, 116, 345, 708, 816, 1204
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 1 cut(s) 1204
NspV TTCGAA 2 cut(s) 789, 860
OliI CACNNNNGTG 1 cut(s) 364
PcsI WCGNNNNNNNCGW 2 cut(s) 1001, 1110
PdiI GCCGGC 1 cut(s) 1156
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 3 cut(s) 392, 680, 809
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 974
PinAI ACCGGT 1 cut(s) 1046
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 143, 720
PspGI CCWGG 2 cut(s) 143, 720
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 978
PstI CTGCAG 2 cut(s) 641, 655
PstNI CAGNNNCTG 1 cut(s) 636
PsuI RGATCY 1 cut(s) 971
PvuII CAGCTG 1 cut(s) 335
RigI GGCCGGCC 1 cut(s) 1158
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 364, 709
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 452, 600, 1034
Sau3AI GATC 6 cut(s) 7, 109, 971, 1038, 1071, 1087
Sau96I GGNCC 1 cut(s) 978
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 3 cut(s) 145, 722, 976
SduI GDGCHC 3 cut(s) 447, 959, 995
SfaNI GCATC 6 cut(s) 193, 226, 446, 616, 637, 1084
SfcI CTRYAG 3 cut(s) 637, 651, 984
SfuI TTCGAA 2 cut(s) 789, 860
SinI GGWCC 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 364, 709
SmlI CTYRAG 2 cut(s) 587, 1033
SmoI CTYRAG 2 cut(s) 587, 1033
Sse9I AATT 5 cut(s) 29, 375, 461, 785, 1106
SsiI CCGC 4 cut(s) 216, 219, 380, 498
SspI AATATT 1 cut(s) 406
SspMI CTAG 4 cut(s) 18, 287, 909, 1029
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 143, 720, 974
StyI CCWWGG 2 cut(s) 531, 888
TaaI ACNGT 2 cut(s) 105, 1114
TaiI ACGT 3 cut(s) 754, 767, 998
TaqI TCGA 5 cut(s) 300, 312, 789, 860, 1090
TasI AATT 5 cut(s) 29, 375, 461, 785, 1106
TatI WGTACW 1 cut(s) 165
TauI GCSGC 3 cut(s) 218, 221, 500
TfiI GAWTC 3 cut(s) 392, 680, 809
Tru1I TTAA 3 cut(s) 452, 600, 1034
Tru9I TTAA 3 cut(s) 452, 600, 1034
TscAI CASTG 3 cut(s) 488, 716, 810
TseI GCWGC 8 cut(s) 116, 239, 249, 332, 335, 356, 509, 650
TspDTI ATGAA 5 cut(s) 47, 405, 471, 672, 801
TspGWI ACGGA 3 cut(s) 463, 758, 856
TspRI CASTG 3 cut(s) 488, 716, 810
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 1033
VneI GTGCAC 1 cut(s) 955
VpaK11BI GGWCC 1 cut(s) 978
XagI CCTNNNNNAGG 1 cut(s) 1171
XapI RAATTY 1 cut(s) 785
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 1204
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 4 cut(s) 18, 287, 909, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.