RchiOBHm_Chr6g0298351

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020573
Physical Location & Seq
Reverse (-)
59832241 .. 59833491
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGGAAGGGCTACAGAATCTGACGACTAAGTGGAAAAAGCTGTCTCCCCTATCCTCTGAGTGTCGTATCTACCGAGTTCCCAAGAGGCTACGTGACGTGAAGGAGAAGGCTTACACACCTCAGGTGGTCTCACTTGGTCCGCTTCACCATGGTGGAGAAGGTCTCCAAGCCATGGAAGAACATAAATTGCGGTATGTGAAGGACTTCTTTGAACGGATCCCCGAGGTAAGAGTAGAGGATTGTTTCACATATTTGATGGATCGGGAAGAAAAGATCCGTGCATGTTATGCAGTAGCAATTGAATTTAATGCACATAAACTTGTGGAAATAATTCTGGTTGATGCCATTTTCACCTTTGAGTTGCTGCTCAAGAGCTCTTTTGATTCCCTGCAAGATAAGAATGACTGTATATTTGGGAAGCCAAGGATGTCCAGGGTCGTGATATACGACATGATGTTGCTTGAAAATCAGATCCCATTCTTCATTCTCGAGTATTTTCATACTGTATACTTCACCAACCGTCCTATTCCTTGGCTTTCCCTCTTTGAGCTTACCCATAAGTTCTTGCAGAATGGGGTATACATAAGGTCACTTGGAGATACGATGAAGAAACTCAATCATGGTCCTCAAGAAGATAGAATACACCATTTTGTTGATTTTGTTCTAAAATGTCATCGACCTCAACCTTCTGAGCTTCCCCAAATAAAGAAACTCAAGACTTCAACCATACCACGGGCCACAGCATTACACCAGGCTGGAGTCAAGTTTGTGAATGTCAGTAACCAAAACTTGTTCGAGTTTGAGAATGGATATCTGAAAATTCCACACTTTAAGAATTCGCGGTTCAACAGAAAATTTCTTTCGGAATCTCATTGCCTACGAGCATGTCCCCGGCACAAGTGGAAGGCAAGCTTGAAACAGGACTACTTCAGTACTCCATGGGTTGGACTGTCTGTTATTGTAGCGGCTATACTTCTCGTGCTCACTTTCATTCAAACTGTGTGCTCTATAATTGCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

340

Amino Acids

39.77

Weight (kDa)

9.26

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 23 - 279 3.2e-59 Plant protein of unknown function
DUF247 PF03140 291 - 328 9.5e-06 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020573)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0298351 RchiOBHm_Chr6g0298371
rosa_multiflora Rmu_sc0006543.1_g000005 Rmu_sc0006543.1_g000006 Rmu_sc0010802.1_g000001
rosa_samantha Rh6AG391300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 172, 944
AccI GTMKAC 2 cut(s) 507, 579
AccII CGCG 1 cut(s) 841
AciI CCGC 4 cut(s) 140, 190, 841, 965
AclWI GGATC 5 cut(s) 211, 224, 267, 268, 466
AcsI RAATTY 4 cut(s) 302, 819, 835, 854
AcuI CTGAAG 1 cut(s) 913
AfaI GTAC 1 cut(s) 934
AfiI CCNNNNNNNGG 3 cut(s) 172, 732, 944
AgsI TTSAA 7 cut(s) 212, 302, 464, 723, 847, 916, 995
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 2 cut(s) 431, 750
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 5 cut(s) 40, 375, 550, 694, 912
AluI AGCT 5 cut(s) 40, 375, 550, 694, 912
Alw21I GWGCWC 3 cut(s) 377, 984, 1007
Alw26I GTCTC 3 cut(s) 48, 133, 167
AlwI GGATC 5 cut(s) 211, 224, 267, 268, 466
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 2 cut(s) 221, 488
AoxI GGCC 1 cut(s) 735
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 4 cut(s) 302, 819, 835, 854
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 2 cut(s) 203, 330
AspS9I GGNCC 3 cut(s) 137, 623, 735
AsuC2I CCSGG 1 cut(s) 892
AsuHPI GGTGA 3 cut(s) 137, 343, 505
AvaI CYCGRG 2 cut(s) 221, 488
AvaII GGWCC 2 cut(s) 137, 623
AxyI CCTNAGG 1 cut(s) 120
BamHI GGATCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
BauI CACGAG 1 cut(s) 977
Bbv12I GWGCWC 3 cut(s) 377, 984, 1007
BbvI GCAGC 1 cut(s) 351
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 433, 752
BcnI CCSGG 1 cut(s) 892
BcoDI GTCTC 3 cut(s) 48, 133, 167
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 365, 966
BlsI GCNGC 2 cut(s) 366, 967
BmcAI AGTACT 1 cut(s) 934
Bme1390I CCNGG 3 cut(s) 433, 752, 892
Bme18I GGWCC 2 cut(s) 137, 623
BmeT110I CYCGRG 2 cut(s) 221, 488
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 137, 623, 735
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 3 cut(s) 433, 752, 892
BmsI GCATC 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BpmI CTGGAG 1 cut(s) 777
BpuEI CTTGAG 3 cut(s) 353, 612, 698
BpuMI CCSGG 1 cut(s) 892
BsaAI YACGTR 1 cut(s) 92
BsaI GGTCTC 2 cut(s) 133, 167
BsaJI CCNNGG 9 cut(s) 148, 171, 222, 422, 432, 530, 731, 890, 938
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 732, 944
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 2 cut(s) 433, 752
BseDI CCNNGG 9 cut(s) 148, 171, 222, 422, 432, 530, 731, 890, 938
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 172, 732, 944
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 3 cut(s) 48, 134, 681
BseXI GCAGC 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 841
BshFI GGCC 1 cut(s) 737
BsiHKAI GWGCWC 3 cut(s) 377, 984, 1007
BsiHKCI CYCGRG 2 cut(s) 221, 488
BsiSI CCGG 1 cut(s) 892
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 3 cut(s) 172, 732, 944
BsmAI GTCTC 3 cut(s) 48, 133, 167
BsmFI GGGAC 1 cut(s) 873
BsnI GGCC 1 cut(s) 737
Bso31I GGTCTC 2 cut(s) 133, 167
BsoBI CYCGRG 2 cut(s) 221, 488
Bsp1286I GDGCHC 3 cut(s) 377, 984, 1007
Bsp143I GATC 4 cut(s) 216, 259, 273, 471
Bsp19I CCATGG 3 cut(s) 148, 171, 938
BspACI CCGC 4 cut(s) 140, 190, 841, 965
BspANI GGCC 1 cut(s) 737
BspCNI CTCAG 3 cut(s) 49, 133, 682
BspFNI CGCG 1 cut(s) 841
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 5 cut(s) 211, 224, 267, 268, 466
BspTNI GGTCTC 2 cut(s) 133, 167
BsrDI GCAATG 1 cut(s) 871
BssECI CCNNGG 9 cut(s) 148, 171, 222, 422, 432, 530, 731, 890, 938
BssMI GATC 4 cut(s) 216, 259, 273, 471
BssNAI GTATAC 2 cut(s) 508, 580
BssSI CACGAG 1 cut(s) 977
BssT1I CCWWGG 5 cut(s) 148, 171, 422, 530, 938
Bst1107I GTATAC 2 cut(s) 508, 580
Bst2BI CACGAG 1 cut(s) 977
Bst2UI CCWGG 2 cut(s) 433, 752
Bst4CI ACNGT 5 cut(s) 407, 505, 521, 951, 1000
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 910
BstDEI CTNAG 4 cut(s) 27, 57, 120, 690
BstDSI CCRYGG 4 cut(s) 148, 171, 731, 938
BstF5I GGATG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 841
BstKTI GATC 4 cut(s) 219, 262, 276, 474
BstMAI GTCTC 3 cut(s) 48, 133, 167
BstMBI GATC 4 cut(s) 216, 259, 273, 471
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 433, 752
BstNSI RCATGY 2 cut(s) 285, 888
BstSCI CCNGG 3 cut(s) 431, 750, 890
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 1 cut(s) 841
BstV1I GCAGC 1 cut(s) 351
BstX2I RGATCY 3 cut(s) 216, 273, 471
BstYI RGATCY 3 cut(s) 216, 273, 471
BstZ17I GTATAC 2 cut(s) 508, 580
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 737
BtgI CCRYGG 4 cut(s) 148, 171, 731, 938
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 910
CaiI CAGNNNCTG 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 137, 623, 735
Csp6I GTAC 1 cut(s) 933
CviAII CATG 7 cut(s) 149, 172, 282, 451, 620, 885, 939
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 4 cut(s) 27, 57, 120, 690
DpnI GATC 4 cut(s) 218, 261, 275, 473
DpnII GATC 4 cut(s) 216, 259, 273, 471
Ecl136II GAGCTC 1 cut(s) 375
Eco130I CCWWGG 5 cut(s) 148, 171, 422, 530, 938
Eco24I GRGCYC 1 cut(s) 377
Eco31I GGTCTC 2 cut(s) 133, 167
Eco32I GATATC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 137, 623
Eco53kI GAGCTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 913
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 2 cut(s) 221, 488
EcoICRI GAGCTC 1 cut(s) 375
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 431, 750
EcoRV GATATC 1 cut(s) 812
EcoT14I CCWWGG 5 cut(s) 148, 171, 422, 530, 938
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 5 cut(s) 148, 171, 422, 530, 938
FaeI CATG 7 cut(s) 152, 175, 285, 454, 623, 888, 942
FalI AAGNNNNNCTT 4 cut(s) 191, 223, 896, 928
FaqI GGGAC 1 cut(s) 873
FatI CATG 7 cut(s) 148, 171, 281, 450, 619, 884, 938
FblI GTMKAC 2 cut(s) 507, 579
Fnu4HI GCNGC 2 cut(s) 365, 966
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 365, 966
GluI GCNGC 2 cut(s) 365, 966
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 1 cut(s) 737
HapII CCGG 1 cut(s) 892
Hin1II CATG 7 cut(s) 152, 175, 285, 454, 623, 888, 942
HindIII AAGCTT 1 cut(s) 910
HinfI GANTC 4 cut(s) 16, 383, 759, 866
HpaII CCGG 1 cut(s) 892
HphI GGTGA 3 cut(s) 137, 343, 505
Hpy166II GTNNAC 2 cut(s) 508, 580
Hpy188I TCNGA 6 cut(s) 21, 58, 471, 691, 816, 865
Hpy188III TCNNGA 6 cut(s) 263, 370, 439, 488, 629, 715
Hpy8I GTNNAC 2 cut(s) 508, 580
HpyAV CCTTC 6 cut(s) 94, 100, 152, 193, 696, 898
HpyCH4III ACNGT 5 cut(s) 407, 505, 521, 951, 1000
HpyCH4IV ACGT 2 cut(s) 91, 96
HpyCH4V TGCA 5 cut(s) 281, 290, 311, 391, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 4 cut(s) 27, 57, 120, 690
HpySE526I ACGT 2 cut(s) 91, 96
Hsp92II CATG 7 cut(s) 152, 175, 285, 454, 623, 888, 942
Kzo9I GATC 4 cut(s) 216, 259, 273, 471
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 331
MaeII ACGT 2 cut(s) 91, 96
MaeIII GTNAC 3 cut(s) 92, 588, 779
MalI GATC 4 cut(s) 218, 261, 275, 473
MboI GATC 4 cut(s) 216, 259, 273, 471
MboII GAAGA 5 cut(s) 188, 278, 472, 619, 644
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 3 cut(s) 216, 273, 471
MhlI GDGCHC 3 cut(s) 377, 984, 1007
MluCI AATT 8 cut(s) 185, 297, 302, 330, 819, 835, 854, 1011
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 8 cut(s) 64, 78, 129, 217, 229, 551, 636, 690
MroXI GAANNNNTTC 2 cut(s) 203, 330
MseI TTAA 2 cut(s) 306, 831
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 1 cut(s) 892
MspR9I CCNGG 3 cut(s) 433, 752, 892
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 2 cut(s) 433, 752
MvnI CGCG 1 cut(s) 841
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 1 cut(s) 892
NcoI CCATGG 3 cut(s) 148, 171, 938
NdeII GATC 4 cut(s) 216, 259, 273, 471
NlaIII CATG 7 cut(s) 152, 175, 285, 454, 623, 888, 942
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 2 cut(s) 92, 588
NspI RCATGY 2 cut(s) 285, 888
OliI CACNNNNGTG 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 488
PcsI WCGNNNNNNNCGW 2 cut(s) 70, 444
PdmI GAANNNNTTC 2 cut(s) 203, 330
PfeI GAWTC 3 cut(s) 16, 383, 866
PflMI CCANNNNNTGG 2 cut(s) 172, 944
PkrI GCNGC 2 cut(s) 366, 967
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
Ppu21I YACGTR 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 431, 750
PspGI CCWGG 2 cut(s) 431, 750
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 3 cut(s) 137, 623, 735
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 3 cut(s) 216, 273, 471
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 306, 831
SatI GCNGC 2 cut(s) 365, 966
Sau3AI GATC 4 cut(s) 216, 259, 273, 471
Sau96I GGNCC 3 cut(s) 137, 623, 735
ScaI AGTACT 1 cut(s) 934
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 3 cut(s) 433, 752, 892
SduI GDGCHC 3 cut(s) 377, 984, 1007
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 11
Sfr274I CTCGAG 1 cut(s) 488
SinI GGWCC 2 cut(s) 137, 623
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 4 cut(s) 368, 488, 627, 713
SmoI CTYRAG 4 cut(s) 368, 488, 627, 713
Sse9I AATT 8 cut(s) 185, 297, 302, 330, 819, 835, 854, 1011
SsiI CCGC 4 cut(s) 140, 190, 841, 965
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 431, 750, 890
StyI CCWWGG 5 cut(s) 148, 171, 422, 530, 938
TaaI ACNGT 5 cut(s) 407, 505, 521, 951, 1000
TaiI ACGT 2 cut(s) 94, 99
TaqI TCGA 3 cut(s) 489, 676, 795
TasI AATT 8 cut(s) 185, 297, 302, 330, 819, 835, 854, 1011
TatI WGTACW 1 cut(s) 932
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 3 cut(s) 16, 383, 866
Tru1I TTAA 2 cut(s) 306, 831
Tru9I TTAA 2 cut(s) 306, 831
TseFI GTSAC 2 cut(s) 92, 588
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 2 cut(s) 92, 588
TspDTI ATGAA 4 cut(s) 472, 488, 620, 979
TspGWI ACGGA 2 cut(s) 229, 266
Van91I CCANNNNNTGG 2 cut(s) 172, 944
VpaK11BI GGWCC 2 cut(s) 137, 623
XapI RAATTY 4 cut(s) 302, 819, 835, 854
XceI RCATGY 2 cut(s) 285, 888
XhoI CTCGAG 1 cut(s) 488
XmiI GTMKAC 2 cut(s) 507, 579
XmnI GAANNNNTTC 2 cut(s) 203, 330
ZrmI AGTACT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.