Rmu_sc0010802.1_g000001

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010802.1
OG0020573
Physical Location & Seq
Forward (+)
3443 .. 3793
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010802.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atggatcgcctggtagatcaatccaagcatgtggagctgcttgttgagaataatatccttgaatctaagctaccagatagtgaagcagctgcggcctttattaactcacttgacttggggcctattttgttcagtagagatttctactgtactgatctctgtgaggctctgaatgcatactatagtgtcctctggcacaagtggaatgaaggcaagcttgaaacgggactacttcagtactccatgggttggactgtctgttattgtagcggctatacttctcgtgctcactttcattcaaactgtgtgctctataattgctatatagggtctcttgtcgcttcattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

116

Amino Acids

13.19

Weight (kDa)

4.96

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020573)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0298351 RchiOBHm_Chr6g0298371
rosa_multiflora Rmu_sc0006543.1_g000005 Rmu_sc0006543.1_g000006 Rmu_sc0010802.1_g000001
rosa_samantha Rh6AG391300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AciI CCGC 2 cut(s) 92, 270
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 151, 239
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 3 cut(s) 62, 221, 300
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 4 cut(s) 37, 70, 89, 217
AluI AGCT 4 cut(s) 37, 70, 89, 217
Alw21I GWGCWC 2 cut(s) 289, 312
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 93, 119
ApeKI GCWGC 3 cut(s) 37, 86, 89
AspS9I GGNCC 1 cut(s) 119
BauI CACGAG 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 289, 312
BbvI GCAGC 3 cut(s) 24, 76, 98
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 5 cut(s) 38, 87, 90, 93, 271
BlsI GCNGC 5 cut(s) 39, 88, 91, 94, 272
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 249
BseXI GCAGC 3 cut(s) 24, 76, 98
BshFI GGCC 2 cut(s) 95, 121
BsiHKAI GWGCWC 2 cut(s) 289, 312
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 95, 121
Bso31I GGTCTC 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 289, 312
Bsp143I GATC 3 cut(s) 4, 16, 154
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 2 cut(s) 92, 270
BspANI GGCC 2 cut(s) 95, 121
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 3 cut(s) 4, 16, 154
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 3 cut(s) 149, 256, 305
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 243
BstKTI GATC 3 cut(s) 7, 19, 157
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 4, 16, 154
BstMWI GCNNNNNNNGC 3 cut(s) 34, 92, 173
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 3 cut(s) 24, 76, 98
BstXI CCANNNNNNTGG 1 cut(s) 31
BsuRI GGCC 2 cut(s) 95, 121
BtgI CCRYGG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 150, 238
CviAII CATG 2 cut(s) 29, 244
CviJI RGCY 8 cut(s) 37, 70, 89, 95, 121, 167, 217, 273
CviKI_1 RGCY 8 cut(s) 37, 70, 89, 95, 121, 167, 217, 273
CviQI GTAC 2 cut(s) 150, 238
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 6, 18, 156
DpnII GATC 3 cut(s) 4, 16, 154
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 32, 247
FaiI YATR 8 cut(s) 30, 178, 183, 245, 276, 315, 324, 326
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 28, 243
Fnu4HI GCNGC 5 cut(s) 38, 87, 90, 93, 271
Fsp4HI GCNGC 5 cut(s) 38, 87, 90, 93, 271
GluI GCNGC 5 cut(s) 38, 87, 90, 93, 271
HaeIII GGCC 2 cut(s) 95, 121
Hin1II CATG 2 cut(s) 32, 247
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 3 cut(s) 149, 256, 305
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 92, 173
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 2 cut(s) 32, 247
Kzo9I GATC 3 cut(s) 4, 16, 154
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 23, 87, 178
Lsp1109I GCAGC 3 cut(s) 24, 76, 98
MalI GATC 3 cut(s) 6, 18, 156
MboI GATC 3 cut(s) 4, 16, 154
MhlI GDGCHC 2 cut(s) 289, 312
MluCI AATT 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 2 cut(s) 157, 200
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 34, 92, 173
NcoI CCATGG 1 cut(s) 243
NdeII GATC 3 cut(s) 4, 16, 154
NlaIII CATG 2 cut(s) 32, 247
NlaIV GGNNCC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 32
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 5 cut(s) 39, 88, 91, 94, 272
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 151, 239
RsaNI GTAC 2 cut(s) 150, 238
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 5 cut(s) 38, 87, 90, 93, 271
Sau3AI GATC 3 cut(s) 4, 16, 154
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 289, 312
SetI ASST 4 cut(s) 39, 72, 91, 219
SfcI CTRYAG 1 cut(s) 181
Sse9I AATT 1 cut(s) 316
SsiI CCGC 2 cut(s) 92, 270
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 149, 256, 305
TasI AATT 1 cut(s) 316
TatI WGTACW 2 cut(s) 149, 237
TauI GCSGC 2 cut(s) 95, 273
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 3 cut(s) 37, 86, 89
TspDTI ATGAA 3 cut(s) 222, 284, 333
Van91I CCANNNNNTGG 1 cut(s) 249
XceI RCATGY 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.