Rh6AG391300

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0020573
Physical Location & Seq
Reverse (-)
58971946 .. 58979668
7723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG391300.1

Sequence Viewer

Length: 522 bp
ATGCAAGGGCTACAGAATCTGACGTCTAAGTGGAAAAAGCTGTCTCCCCTATCCTCTGAGTGTCGTATCTACAGAGTTCCCAAGAGGCTACGTGACGTGAAGGAGAAGGCTTACACACCTCAGGTAGTCTCACTTGGTCCGCTTCACCATGGTGGAGAAGGTCTCCAAGCCATGGAAGAACATAAATTGCGGTATGTGAAGGACTTCTTTGAACGGATCCCCGAGTGTGAGCTTCATGATCACTACATCAGCGATTATGTGTTTTTCATAGATCGCCTGGTGGATCAATCCAAGGATGTGGAGCTGCTTGTTGAGAATAATATCCTTGAATCTAAACTACTAGATAGTGAAGCAGCTGCGGCCTTTATTAACTCACTTGACTTCGGGTCTATTTTGTTCAGTAGAGATTTCTACTTTACTGATCTCTGTGAGGCTCTGAATGCATACTACAGTGTCCCCTGGCACAAGTGGAAGGCAAGCTTGAAACAGGACTACTTCAGTACTCCATGTGTGTTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

173

Amino Acids

20.19

Weight (kDa)

5.86

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 23 - 71 3.6e-18 Plant protein of unknown function
DUF247 PF03140 70 - 172 9.4e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020573)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0298351 RchiOBHm_Chr6g0298371
rosa_multiflora Rmu_sc0006543.1_g000005 Rmu_sc0006543.1_g000006 Rmu_sc0010802.1_g000001
rosa_samantha Rh6AG391300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 172
AciI CCGC 3 cut(s) 140, 190, 359
AclWI GGATC 3 cut(s) 211, 224, 291
AcuI CTGAAG 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 212, 329, 484
AhdI GACNNNNNGTC 1 cut(s) 385
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 2 cut(s) 276, 458
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 5 cut(s) 40, 232, 304, 356, 480
AluI AGCT 5 cut(s) 40, 232, 304, 356, 480
Alw26I GTCTC 3 cut(s) 48, 133, 167
AlwI GGATC 3 cut(s) 211, 224, 291
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 304, 353, 356
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 120
BamHI GGATCC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 291, 343, 365
BciT130I CCWGG 2 cut(s) 278, 460
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 48, 133, 167
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 3 cut(s) 11, 70, 448
BisI GCNGC 4 cut(s) 305, 354, 357, 360
BlsI GCNGC 4 cut(s) 306, 355, 358, 361
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 278, 460
Bme18I GGWCC 1 cut(s) 137
BmeRI GACNNNNNGTC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 278, 460
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BsaAI YACGTR 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 148, 171, 291, 458
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 2 cut(s) 278, 460
BseDI CCNNGG 4 cut(s) 148, 171, 291, 458
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 48, 134
BseXI GCAGC 3 cut(s) 291, 343, 365
BshFI GGCC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 3 cut(s) 48, 133, 167
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 5 cut(s) 216, 238, 271, 283, 421
Bsp19I CCATGG 2 cut(s) 148, 171
BspACI CCGC 3 cut(s) 140, 190, 359
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 49, 133
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 3 cut(s) 211, 224, 291
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 148, 171, 291, 458
BssMI GATC 5 cut(s) 216, 238, 271, 283, 421
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 3 cut(s) 148, 171, 291
Bst2UI CCWGG 2 cut(s) 278, 460
Bst4CI ACNGT 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 3 cut(s) 27, 57, 120
BstDSI CCRYGG 2 cut(s) 148, 171
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 5 cut(s) 219, 241, 274, 286, 424
BstMAI GTCTC 3 cut(s) 48, 133, 167
BstMBI GATC 5 cut(s) 216, 238, 271, 283, 421
BstMWI GCNNNNNNNGC 2 cut(s) 359, 440
BstNI CCWGG 2 cut(s) 278, 460
BstSCI CCNGG 2 cut(s) 276, 458
BstSFI CTRYAG 3 cut(s) 11, 70, 448
BstV1I GCAGC 3 cut(s) 291, 343, 365
BstX2I RGATCY 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 2 cut(s) 148, 171
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 501
CviAII CATG 4 cut(s) 149, 172, 236, 507
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 3 cut(s) 27, 57, 120
DpnI GATC 5 cut(s) 218, 240, 273, 285, 423
DpnII GATC 5 cut(s) 216, 238, 271, 283, 421
DriI GACNNNNNGTC 1 cut(s) 385
Eam1105I GACNNNNNGTC 1 cut(s) 385
Eco130I CCWWGG 3 cut(s) 148, 171, 291
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 481
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 276, 458
EcoT14I CCWWGG 3 cut(s) 148, 171, 291
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 3 cut(s) 148, 171, 291
FaeI CATG 4 cut(s) 152, 175, 239, 510
FaiI YATR 9 cut(s) 150, 173, 183, 195, 237, 258, 269, 445, 508
FalI AAGNNNNNCTT 4 cut(s) 191, 223, 464, 496
FaqI GGGAC 1 cut(s) 440
FatI CATG 4 cut(s) 148, 171, 235, 506
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 305, 354, 357, 360
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 4 cut(s) 305, 354, 357, 360
FspBI CTAG 1 cut(s) 341
GluI GCNGC 4 cut(s) 305, 354, 357, 360
HaeIII GGCC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 152, 175, 239, 510
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 2 cut(s) 16, 329
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 21, 58, 438
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 5 cut(s) 94, 100, 152, 193, 466
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 3 cut(s) 23, 91, 96
HpyCH4V TGCA 2 cut(s) 4, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 440
HpyF3I CTNAG 3 cut(s) 27, 57, 120
HpySE526I ACGT 3 cut(s) 23, 91, 96
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 152, 175, 239, 510
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 5 cut(s) 216, 238, 271, 283, 421
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 107, 263, 290, 445, 472, 473
Lsp1109I GCAGC 3 cut(s) 291, 343, 365
MaeI CTAG 1 cut(s) 341
MaeII ACGT 3 cut(s) 23, 91, 96
MaeIII GTNAC 1 cut(s) 92
MalI GATC 5 cut(s) 218, 240, 273, 285, 423
MboI GATC 5 cut(s) 216, 238, 271, 283, 421
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 216
MluCI AATT 1 cut(s) 185
MnlI CCTC 4 cut(s) 64, 78, 129, 424
Mph1103I ATGCAT 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 278, 460
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 278, 460
MwoI GCNNNNNNNGC 2 cut(s) 359, 440
NcoI CCATGG 2 cut(s) 148, 171
NdeII GATC 5 cut(s) 216, 238, 271, 283, 421
NlaIII CATG 4 cut(s) 152, 175, 239, 510
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 445
OliI CACNNNNGTG 1 cut(s) 150
PagI TCATGA 1 cut(s) 235
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 16, 329
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 4 cut(s) 306, 355, 358, 361
Ppu21I YACGTR 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 276, 458
PspGI CCWGG 2 cut(s) 276, 458
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 305, 354, 357, 360
Sau3AI GATC 5 cut(s) 216, 238, 271, 283, 421
Sau96I GGNCC 1 cut(s) 137
ScaI AGTACT 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 278, 460
SfcI CTRYAG 3 cut(s) 11, 70, 448
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 185
SsiI CCGC 3 cut(s) 140, 190, 359
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 276, 458
StyI CCWWGG 3 cut(s) 148, 171, 291
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 3 cut(s) 26, 94, 99
TasI AATT 1 cut(s) 185
TatI WGTACW 1 cut(s) 500
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 2 cut(s) 16, 329
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 3 cut(s) 304, 353, 356
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 224, 256
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 341
ZraI GACGTC 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 502
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.