E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0299871 |
| rosa_roxburghii | Rroxscaffold_1G00012470 |
| rosa_samantha | Rh4AG246800 Rh4BG252200 Rh6CG485200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 62 |
| AcsI | RAATTY | 1 cut(s) | 76 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AlwI | GGATC | 1 cut(s) | 62 |
| ApeKI | GCWGC | 1 cut(s) | 24 |
| ApoI | RAATTY | 1 cut(s) | 76 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 221 |
| BbvI | GCAGC | 1 cut(s) | 36 |
| BccI | CCATC | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 226 |
| BisI | GCNGC | 1 cut(s) | 25 |
| BlsI | GCNGC | 1 cut(s) | 26 |
| BmiI | GGNNCC | 1 cut(s) | 117 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 100, 132 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| Bse3DI | GCAATG | 1 cut(s) | 193 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseMI | GCAATG | 1 cut(s) | 193 |
| BseMII | CTCAG | 1 cut(s) | 63 |
| BseRI | GAGGAG | 3 cut(s) | 68, 98, 101 |
| BseXI | GCAGC | 1 cut(s) | 36 |
| BsiWI | CGTACG | 1 cut(s) | 99 |
| Bsp143I | GATC | 1 cut(s) | 67 |
| BspCNI | CTCAG | 1 cut(s) | 64 |
| BspHI | TCATGA | 1 cut(s) | 213 |
| BspLI | GGNNCC | 1 cut(s) | 117 |
| BspPI | GGATC | 1 cut(s) | 62 |
| BsrDI | GCAATG | 1 cut(s) | 193 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 67 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 1 cut(s) | 191 |
| BstDEI | CTNAG | 1 cut(s) | 72 |
| BstKTI | GATC | 1 cut(s) | 70 |
| BstMBI | GATC | 1 cut(s) | 67 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 1 cut(s) | 191 |
| CciI | TCATGA | 1 cut(s) | 213 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviAII | CATG | 1 cut(s) | 214 |
| CviJI | RGCY | 4 cut(s) | 39, 116, 170, 221 |
| CviKI_1 | RGCY | 4 cut(s) | 39, 116, 170, 221 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 1 cut(s) | 72 |
| DpnI | GATC | 1 cut(s) | 69 |
| DpnII | GATC | 1 cut(s) | 67 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 1 cut(s) | 217 |
| FaiI | YATR | 2 cut(s) | 18, 215 |
| FatI | CATG | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 1 cut(s) | 25 |
| Fsp4HI | GCNGC | 1 cut(s) | 25 |
| FspBI | CTAG | 1 cut(s) | 226 |
| GluI | GCNGC | 1 cut(s) | 25 |
| Hin1II | CATG | 1 cut(s) | 217 |
| HinfI | GANTC | 1 cut(s) | 158 |
| Hpy188I | TCNGA | 1 cut(s) | 176 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 214 |
| HpyAV | CCTTC | 1 cut(s) | 29 |
| HpyCH4IV | ACGT | 1 cut(s) | 102 |
| HpyCH4V | TGCA | 2 cut(s) | 189, 198 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 195 |
| HpyF3I | CTNAG | 1 cut(s) | 72 |
| HpySE526I | ACGT | 1 cut(s) | 102 |
| Hsp92II | CATG | 1 cut(s) | 217 |
| Kzo9I | GATC | 1 cut(s) | 67 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| LpnPI | CCDG | 1 cut(s) | 84 |
| Lsp1109I | GCAGC | 1 cut(s) | 36 |
| MaeI | CTAG | 1 cut(s) | 226 |
| MaeII | ACGT | 1 cut(s) | 102 |
| MalI | GATC | 1 cut(s) | 69 |
| MboI | GATC | 1 cut(s) | 67 |
| MboII | GAAGA | 1 cut(s) | 189 |
| MluCI | AATT | 1 cut(s) | 76 |
| MnlI | CCTC | 8 cut(s) | 22, 46, 49, 76, 79, 106, 121, 199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 67 |
| NlaIII | CATG | 1 cut(s) | 217 |
| NlaIV | GGNNCC | 1 cut(s) | 117 |
| PagI | TCATGA | 1 cut(s) | 213 |
| PdmI | GAANNNNTTC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 158 |
| Pfl23II | CGTACG | 1 cut(s) | 99 |
| PkrI | GCNGC | 1 cut(s) | 26 |
| PspLI | CGTACG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 1 cut(s) | 117 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| SatI | GCNGC | 1 cut(s) | 25 |
| Sau3AI | GATC | 1 cut(s) | 67 |
| SetI | ASST | 4 cut(s) | 105, 132, 147, 210 |
| SgeI | CNNG | 6 cut(s) | 40, 64, 83, 154, 178, 202 |
| Sse9I | AATT | 1 cut(s) | 76 |
| SspMI | CTAG | 1 cut(s) | 226 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaiI | ACGT | 1 cut(s) | 105 |
| TaqI | TCGA | 1 cut(s) | 137 |
| TasI | AATT | 1 cut(s) | 76 |
| TfiI | GAWTC | 1 cut(s) | 158 |
| TseI | GCWGC | 1 cut(s) | 24 |
| XapI | RAATTY | 1 cut(s) | 76 |
| XmnI | GAANNNNTTC | 1 cut(s) | 221 |
| XspI | CTAG | 1 cut(s) | 226 |