E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0299871 |
| rosa_roxburghii | Rroxscaffold_1G00012470 |
| rosa_samantha | Rh4AG246800 Rh4BG252200 Rh6CG485200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 59 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AfaI | GTAC | 1 cut(s) | 98 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 141 |
| AlwI | GGATC | 1 cut(s) | 59 |
| AoxI | GGCC | 1 cut(s) | 37 |
| ApeKI | GCWGC | 1 cut(s) | 24 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| BbvI | GCAGC | 1 cut(s) | 36 |
| BccI | CCATC | 1 cut(s) | 85 |
| BclI | TGATCA | 1 cut(s) | 219 |
| BisI | GCNGC | 1 cut(s) | 25 |
| BlsI | GCNGC | 1 cut(s) | 26 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 141 |
| BmiI | GGNNCC | 1 cut(s) | 114 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 97, 129 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseRI | GAGGAG | 3 cut(s) | 65, 95, 98 |
| BseXI | GCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 39 |
| BsiWI | CGTACG | 1 cut(s) | 96 |
| BsnI | GGCC | 1 cut(s) | 39 |
| Bsp143I | GATC | 2 cut(s) | 64, 219 |
| BspANI | GGCC | 1 cut(s) | 39 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspLI | GGNNCC | 1 cut(s) | 114 |
| BspPI | GGATC | 1 cut(s) | 59 |
| BssMI | GATC | 2 cut(s) | 64, 219 |
| BstDEI | CTNAG | 1 cut(s) | 69 |
| BstKTI | GATC | 2 cut(s) | 67, 222 |
| BstMBI | GATC | 2 cut(s) | 64, 219 |
| BstV1I | GCAGC | 1 cut(s) | 36 |
| BsuRI | GGCC | 1 cut(s) | 39 |
| Csp6I | GTAC | 1 cut(s) | 97 |
| CviJI | RGCY | 3 cut(s) | 39, 113, 174 |
| CviKI_1 | RGCY | 3 cut(s) | 39, 113, 174 |
| CviQI | GTAC | 1 cut(s) | 97 |
| DdeI | CTNAG | 1 cut(s) | 69 |
| DpnI | GATC | 2 cut(s) | 66, 221 |
| DpnII | GATC | 2 cut(s) | 64, 219 |
| DriI | GACNNNNNGTC | 1 cut(s) | 141 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 141 |
| FaiI | YATR | 1 cut(s) | 18 |
| FbaI | TGATCA | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 1 cut(s) | 25 |
| Fsp4HI | GCNGC | 1 cut(s) | 25 |
| GluI | GCNGC | 1 cut(s) | 25 |
| HaeIII | GGCC | 1 cut(s) | 39 |
| Hpy188III | TCNNGA | 1 cut(s) | 68 |
| Hpy99I | CGWCG | 1 cut(s) | 50 |
| HpyAV | CCTTC | 1 cut(s) | 29 |
| HpyCH4IV | ACGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 1 cut(s) | 185 |
| HpyF3I | CTNAG | 1 cut(s) | 69 |
| HpySE526I | ACGT | 1 cut(s) | 99 |
| Ksp22I | TGATCA | 1 cut(s) | 219 |
| Kzo9I | GATC | 2 cut(s) | 64, 219 |
| LmnI | GCTCC | 1 cut(s) | 118 |
| LpnPI | CCDG | 1 cut(s) | 81 |
| Lsp1109I | GCAGC | 1 cut(s) | 36 |
| MaeII | ACGT | 1 cut(s) | 99 |
| MalI | GATC | 2 cut(s) | 66, 221 |
| MboI | GATC | 2 cut(s) | 64, 219 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MluCI | AATT | 2 cut(s) | 73, 186 |
| MnlI | CCTC | 7 cut(s) | 22, 43, 46, 73, 76, 103, 118 |
| MseI | TTAA | 1 cut(s) | 226 |
| MunI | CAATTG | 1 cut(s) | 186 |
| NdeII | GATC | 2 cut(s) | 64, 219 |
| NlaIV | GGNNCC | 1 cut(s) | 114 |
| Pfl23II | CGTACG | 1 cut(s) | 96 |
| PkrI | GCNGC | 1 cut(s) | 26 |
| PspLI | CGTACG | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 1 cut(s) | 114 |
| RsaI | GTAC | 1 cut(s) | 98 |
| RsaNI | GTAC | 1 cut(s) | 97 |
| SaqAI | TTAA | 1 cut(s) | 226 |
| SatI | GCNGC | 1 cut(s) | 25 |
| Sau3AI | GATC | 2 cut(s) | 64, 219 |
| SetI | ASST | 2 cut(s) | 102, 129 |
| SgeI | CNNG | 5 cut(s) | 40, 61, 80, 151, 158 |
| Sse9I | AATT | 2 cut(s) | 73, 186 |
| TaiI | ACGT | 1 cut(s) | 102 |
| TaqI | TCGA | 1 cut(s) | 134 |
| TasI | AATT | 2 cut(s) | 73, 186 |
| Tru1I | TTAA | 1 cut(s) | 226 |
| Tru9I | TTAA | 1 cut(s) | 226 |
| TseI | GCWGC | 1 cut(s) | 24 |
| TspGWI | ACGGA | 1 cut(s) | 168 |
| XapI | RAATTY | 1 cut(s) | 73 |