Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0021452

Physical Location & Seq

Genomic Coordinates Reverse (-)

65403365 .. 65405200

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG485200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGAATCAGAGATACTGAGGAAAGATTGAAGCTTGAGGCTTCCTGGTTAACCTCCCAACCTAAAGACTTGTATATCACAATTTTGGTTTGGTTTTCAACAATGGAGGACGACTATTATGTGAGCAGCGAGGACGAAGGCTATTACGATGACGAGGAGGATAATGATGATCCTGAGAATTTGGAGGAGGAGATGATGGCGTACGTTGAGAGTGAGGCTCCAAAGTGTGAGGTGTCATCGACCAAGATTGCAGCAAAAGAAATTGATTCAGAAGTTCTATATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

95

Amino Acids

11.22

Weight (kDa)

4.05

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021452)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299871
rosa_roxburghii	Rroxscaffold_1G00012470
rosa_samantha	Rh4AG246800 Rh4BG252200 Rh6CG485200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	31, 99
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	126, 251
ApoI	RAATTY	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	138, 263
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	46
BisI	GCNGC	2 cut(s)	127, 252
BlsI	GCNGC	2 cut(s)	128, 253
Bme1390I	CCNGG	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuEI	CTTGAG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	9, 165
BseRI	GAGGAG	3 cut(s)	170, 200, 203
BseXI	GCAGC	2 cut(s)	138, 263
BsiWI	CGTACG	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	10, 166
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	164
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	18, 174
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	138, 263
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	4 cut(s)	34, 41, 141, 218
CviKI_1	RGCY	4 cut(s)	34, 41, 141, 218
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	18, 174
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	44
FaiI	YATR	3 cut(s)	75, 120, 280
Fnu4HI	GCNGC	2 cut(s)	127, 252
Fsp4HI	GCNGC	2 cut(s)	127, 252
GluI	GCNGC	2 cut(s)	127, 252
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	2 cut(s)	6, 266
HpaI	GTTAAC	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	11, 271
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	251
HpyF3I	CTNAG	2 cut(s)	18, 174
HpySE526I	ACGT	1 cut(s)	204
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	3 cut(s)	31, 58, 186
Lsp1109I	GCAGC	2 cut(s)	138, 263
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MluCI	AATT	3 cut(s)	81, 178, 261
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	6, 266
Pfl23II	CGTACG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	128, 253
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspLI	CGTACG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	127, 252
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	5 cut(s)	36, 56, 64, 207, 234
SgeI	CNNG	8 cut(s)	47, 57, 58, 82, 142, 166, 185, 256
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	81, 178, 261
StyD4I	CCNGG	1 cut(s)	44
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	81, 178, 261
TfiI	GAWTC	2 cut(s)	6, 266
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	2 cut(s)	126, 251
XapI	RAATTY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.