RchiOBHm_Chr6g0310061

GEM-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
67464742 .. 67467887
3146 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGATACCTATGATGAATGTAGGGACAATGAATCCTGTGGTGATTACAGAGATCCCGACGCTGGAGAAGTACCTTCAGATTGTCACCACCGATGGACATGATTTCTGGTTTATGGGGTTTGTTAACTTTGAGAAAGCTTCGCATCATGTACTAGACAGTGTGTCGAATTTCAGAGCAGTTGGGACCAATGAAGTGCAACCTGTTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.87

Weight (kDa)

4.97

Isoelectric Point (pI)

13.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022804)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0310061
rosa_laevigata RLG00000008388
rosa_samantha Rh6AG490800 Rh6BG500300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 71, 150
AfiI CCNNNNNNNGG 1 cut(s) 61
AhdI GACNNNNNGTC 1 cut(s) 160
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 52, 76
AvaII GGWCC 1 cut(s) 183
BccI CCATC 1 cut(s) 86
BfaI CTAG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 183
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 61
BslFI GGGAC 2 cut(s) 37, 196
BslI CCNNNNNNNGG 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 37, 196
Bsp143I GATC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 1 cut(s) 46
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 70, 149
CviAII CATG 2 cut(s) 98, 146
CviJI RGCY 1 cut(s) 137
CviKI_1 RGCY 1 cut(s) 137
CviQI GTAC 2 cut(s) 70, 149
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DriI GACNNNNNGTC 1 cut(s) 160
Eam1105I GACNNNNNGTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 59
FaeI CATG 2 cut(s) 101, 149
FaiI YATR 4 cut(s) 11, 99, 113, 147
FaqI GGGAC 2 cut(s) 37, 196
FatI CATG 2 cut(s) 97, 145
FspBI CTAG 1 cut(s) 152
GsuI CTGGAG 1 cut(s) 83
HgaI GACGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 101, 149
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 124
HphI GGTGA 2 cut(s) 52, 76
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 78, 173
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 101, 149
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 47, 48, 91
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MflI RGATCY 1 cut(s) 51
MluCI AATT 1 cut(s) 166
MseI TTAA 1 cut(s) 123
NdeII GATC 1 cut(s) 51
NlaIII CATG 2 cut(s) 101, 149
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 71, 150
RsaNI GTAC 2 cut(s) 70, 149
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 183
SetI ASST 4 cut(s) 10, 75, 139, 202
SfaNI GCATC 1 cut(s) 151
SgeI CNNG 7 cut(s) 47, 67, 74, 110, 118, 158, 164
SinI GGWCC 1 cut(s) 183
Sse9I AATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 29, 44, 204
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 166
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.