Rh6BG500300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
70012493 .. 70013838
1346 bp
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UTR
Exon/CDS
Intron
Rh6BG500300.1

Sequence Viewer

Length: 165 bp
ATGGCTCAAGATCACCACGCCATATATGTATCTGAGTCTCGAGCCATGTGGGTTGGTGGTGAAGCTAAGCCAAAACCAATCGTGGATCAAACCCCAACAACGAAGTTGGTATCTGAGTATGTTCTTGGGTATTACGATGCTCGTGGAAGCCTCAGTGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.0

Weight (kDa)

5.45

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022804)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0310061
rosa_laevigata RLG00000008388
rosa_samantha Rh6AG490800 Rh6BG500300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 93
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 5, 71
AvaI CYCGRG 1 cut(s) 39
BauI CACGAG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 39
BmsI GCATC 1 cut(s) 127
Bpu1102I GCTNAGC 1 cut(s) 66
BseMII CTCAG 2 cut(s) 24, 105
BsiHKCI CYCGRG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 39
Bsp143I GATC 2 cut(s) 10, 85
Bsp1720I GCTNAGC 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 25, 106, 165
BspPI GGATC 1 cut(s) 93
BssMI GATC 2 cut(s) 10, 85
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
BstDEI CTNAG 4 cut(s) 33, 66, 114, 152
BstKTI GATC 2 cut(s) 13, 88
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 10, 85
BtsIMutI CAGTG 1 cut(s) 160
CviAII CATG 1 cut(s) 46
CviJI RGCY 5 cut(s) 5, 44, 65, 70, 150
CviKI_1 RGCY 5 cut(s) 5, 44, 65, 70, 150
DdeI CTNAG 4 cut(s) 33, 66, 114, 152
DpnI GATC 2 cut(s) 12, 87
DpnII GATC 2 cut(s) 10, 85
Eco88I CYCGRG 1 cut(s) 39
FaeI CATG 1 cut(s) 49
FaiI YATR 5 cut(s) 23, 25, 27, 47, 120
FatI CATG 1 cut(s) 45
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 35
HphI GGTGA 2 cut(s) 5, 71
Hpy188I TCNGA 2 cut(s) 34, 115
Hpy188III TCNNGA 2 cut(s) 8, 39
HpyF3I CTNAG 4 cut(s) 33, 66, 114, 152
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 10, 85
LweI GCATC 1 cut(s) 127
MalI GATC 2 cut(s) 12, 87
MboI GATC 2 cut(s) 10, 85
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 1 cut(s) 161
NdeII GATC 2 cut(s) 10, 85
NlaIII CATG 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 39
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 10, 85
SchI GAGTC 1 cut(s) 44
SetI ASST 1 cut(s) 67
SfaNI GCATC 1 cut(s) 127
Sfr274I CTCGAG 1 cut(s) 39
SgeI CNNG 9 cut(s) 20, 29, 51, 53, 58, 94, 137, 153, 155
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 6, 39
SmoI CTYRAG 2 cut(s) 6, 39
TaqI TCGA 1 cut(s) 40
TscAI CASTG 1 cut(s) 160
TspRI CASTG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.