Heterogeneous nuclear ribonucleoprotein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g20341 |
| rosa_chinensis | RchiOBHm_Chr5g0002311 |
| rosa_roxburghii | Rroxscaffold_1G00073560 |
| rosa_samantha | Rh1AG029800 Rh5CG019800 Rh5CG549600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 98 |
| AcuI | CTGAAG | 1 cut(s) | 105 |
| AgsI | TTSAA | 3 cut(s) | 211, 218, 242 |
| AjnI | CCWGG | 1 cut(s) | 182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 78, 110 |
| AluBI | AGCT | 2 cut(s) | 139, 248 |
| AluI | AGCT | 2 cut(s) | 139, 248 |
| ApeKI | GCWGC | 1 cut(s) | 245 |
| BanI | GGYRCC | 1 cut(s) | 98 |
| BbvI | GCAGC | 1 cut(s) | 257 |
| BccI | CCATC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 1 cut(s) | 184 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BisI | GCNGC | 1 cut(s) | 246 |
| BlsI | GCNGC | 1 cut(s) | 247 |
| Bme1390I | CCNGG | 1 cut(s) | 184 |
| BmiI | GGNNCC | 2 cut(s) | 11, 100 |
| BmrFI | CCNGG | 1 cut(s) | 184 |
| BmsI | GCATC | 1 cut(s) | 103 |
| BoxI | GACNNNNGTC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| BseBI | CCWGG | 1 cut(s) | 184 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseMII | CTCAG | 2 cut(s) | 39, 132 |
| BseRI | GAGGAG | 2 cut(s) | 46, 63 |
| BseXI | GCAGC | 1 cut(s) | 257 |
| BshNI | GGYRCC | 1 cut(s) | 98 |
| Bsp143I | GATC | 1 cut(s) | 196 |
| BspCNI | CTCAG | 2 cut(s) | 38, 131 |
| BspLI | GGNNCC | 2 cut(s) | 11, 100 |
| BspT107I | GGYRCC | 1 cut(s) | 98 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 1 cut(s) | 196 |
| Bst2UI | CCWGG | 1 cut(s) | 184 |
| Bst4CI | ACNGT | 2 cut(s) | 191, 230 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstC8I | GCNNGC | 1 cut(s) | 173 |
| BstDEI | CTNAG | 2 cut(s) | 25, 118 |
| BstKTI | GATC | 1 cut(s) | 199 |
| BstMBI | GATC | 1 cut(s) | 196 |
| BstNI | CCWGG | 1 cut(s) | 184 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 231 |
| BstSCI | CCNGG | 1 cut(s) | 182 |
| BstV1I | GCAGC | 1 cut(s) | 257 |
| BtsI | GCAGTG | 1 cut(s) | 151 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 151 |
| Cac8I | GCNNGC | 1 cut(s) | 173 |
| CviAII | CATG | 1 cut(s) | 49 |
| CviJI | RGCY | 3 cut(s) | 139, 207, 248 |
| CviKI_1 | RGCY | 3 cut(s) | 139, 207, 248 |
| DdeI | CTNAG | 2 cut(s) | 25, 118 |
| DpnI | GATC | 1 cut(s) | 198 |
| DpnII | GATC | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| Eco57I | CTGAAG | 1 cut(s) | 105 |
| EcoRII | CCWGG | 1 cut(s) | 182 |
| FaeI | CATG | 1 cut(s) | 52 |
| FaiI | YATR | 2 cut(s) | 50, 142 |
| FatI | CATG | 1 cut(s) | 48 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 1 cut(s) | 246 |
| Fsp4HI | GCNGC | 1 cut(s) | 246 |
| GluI | GCNGC | 1 cut(s) | 246 |
| Hin1II | CATG | 1 cut(s) | 52 |
| HinfI | GANTC | 2 cut(s) | 45, 214 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 121 |
| HpyAV | CCTTC | 2 cut(s) | 23, 77 |
| HpyCH4III | ACNGT | 2 cut(s) | 191, 230 |
| HpyCH4V | TGCA | 1 cut(s) | 144 |
| HpyF3I | CTNAG | 2 cut(s) | 25, 118 |
| Hsp92II | CATG | 1 cut(s) | 52 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 1 cut(s) | 196 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| LpnPI | CCDG | 3 cut(s) | 169, 189, 196 |
| Lsp1109I | GCAGC | 1 cut(s) | 257 |
| LweI | GCATC | 1 cut(s) | 103 |
| MalI | GATC | 1 cut(s) | 198 |
| MboI | GATC | 1 cut(s) | 196 |
| MboII | GAAGA | 3 cut(s) | 134, 137, 223 |
| MnlI | CCTC | 4 cut(s) | 24, 81, 84, 127 |
| MseI | TTAA | 1 cut(s) | 165 |
| MspR9I | CCNGG | 1 cut(s) | 184 |
| MvaI | CCWGG | 1 cut(s) | 184 |
| NdeII | GATC | 1 cut(s) | 196 |
| NlaIII | CATG | 1 cut(s) | 52 |
| NlaIV | GGNNCC | 2 cut(s) | 11, 100 |
| PfeI | GAWTC | 2 cut(s) | 45, 214 |
| PkrI | GCNGC | 1 cut(s) | 247 |
| PshAI | GACNNNNGTC | 1 cut(s) | 231 |
| Psp6I | CCWGG | 1 cut(s) | 182 |
| PspGI | CCWGG | 1 cut(s) | 182 |
| PspN4I | GGNNCC | 2 cut(s) | 11, 100 |
| SaqAI | TTAA | 1 cut(s) | 165 |
| SatI | GCNGC | 1 cut(s) | 246 |
| Sau3AI | GATC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 1 cut(s) | 184 |
| SetI | ASST | 3 cut(s) | 15, 141, 250 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| SgeI | CNNG | 8 cut(s) | 61, 184, 195, 196, 216, 220, 230, 236 |
| StyD4I | CCNGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 2 cut(s) | 191, 230 |
| TfiI | GAWTC | 2 cut(s) | 45, 214 |
| Tru1I | TTAA | 1 cut(s) | 165 |
| Tru9I | TTAA | 1 cut(s) | 165 |
| TscAI | CASTG | 2 cut(s) | 33, 151 |
| TseI | GCWGC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 33, 151 |