No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g20341 |
| rosa_chinensis | RchiOBHm_Chr5g0002311 |
| rosa_roxburghii | Rroxscaffold_1G00073560 |
| rosa_samantha | Rh1AG029800 Rh5CG019800 Rh5CG549600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 5 |
| Acc36I | ACCTGC | 1 cut(s) | 52 |
| AclWI | GGATC | 1 cut(s) | 151 |
| AcoI | YGGCCR | 1 cut(s) | 136 |
| AcsI | RAATTY | 1 cut(s) | 15 |
| AgsI | TTSAA | 3 cut(s) | 20, 305, 326 |
| AjnI | CCWGG | 1 cut(s) | 269 |
| AluBI | AGCT | 2 cut(s) | 167, 332 |
| AluI | AGCT | 2 cut(s) | 167, 332 |
| AlwI | GGATC | 1 cut(s) | 151 |
| AoxI | GGCC | 1 cut(s) | 136 |
| ApeKI | GCWGC | 1 cut(s) | 329 |
| ApoI | RAATTY | 1 cut(s) | 15 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| BaeGI | GKGCMC | 1 cut(s) | 80 |
| BccI | CCATC | 2 cut(s) | 88, 124 |
| BceAI | ACGGC | 1 cut(s) | 123 |
| BciT130I | CCWGG | 1 cut(s) | 271 |
| BclI | TGATCA | 1 cut(s) | 283 |
| BfaI | CTAG | 1 cut(s) | 340 |
| BfuAI | ACCTGC | 1 cut(s) | 52 |
| BisI | GCNGC | 1 cut(s) | 330 |
| BlsI | GCNGC | 1 cut(s) | 331 |
| Bme1390I | CCNGG | 1 cut(s) | 271 |
| BmrFI | CCNGG | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 1 cut(s) | 269 |
| BsaWI | WCCGGW | 1 cut(s) | 126 |
| BseBI | CCWGG | 1 cut(s) | 271 |
| BseDI | CCNNGG | 1 cut(s) | 269 |
| BseGI | GGATG | 2 cut(s) | 135, 219 |
| BseSI | GKGCMC | 1 cut(s) | 80 |
| BsgI | GTGCAG | 1 cut(s) | 80 |
| BshFI | GGCC | 1 cut(s) | 138 |
| BsiSI | CCGG | 1 cut(s) | 127 |
| BsnI | GGCC | 1 cut(s) | 138 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| Bsp143I | GATC | 3 cut(s) | 114, 156, 283 |
| BspANI | GGCC | 1 cut(s) | 138 |
| BspMI | ACCTGC | 1 cut(s) | 52 |
| BspPI | GGATC | 1 cut(s) | 151 |
| BssECI | CCNNGG | 1 cut(s) | 269 |
| BssMI | GATC | 3 cut(s) | 114, 156, 283 |
| Bst2UI | CCWGG | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 3 cut(s) | 75, 174, 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 75 |
| BstC8I | GCNNGC | 1 cut(s) | 136 |
| BstDEI | CTNAG | 1 cut(s) | 34 |
| BstF5I | GGATG | 2 cut(s) | 135, 219 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 3 cut(s) | 117, 159, 286 |
| BstMBI | GATC | 3 cut(s) | 114, 156, 283 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 75 |
| BstNI | CCWGG | 1 cut(s) | 271 |
| BstSCI | CCNGG | 1 cut(s) | 269 |
| BstSLI | GKGCMC | 1 cut(s) | 80 |
| BstX2I | RGATCY | 1 cut(s) | 156 |
| BstYI | RGATCY | 1 cut(s) | 156 |
| BsuRI | GGCC | 1 cut(s) | 138 |
| BtsCI | GGATG | 2 cut(s) | 135, 219 |
| BveI | ACCTGC | 1 cut(s) | 52 |
| Cac8I | GCNNGC | 1 cut(s) | 136 |
| CfoI | GCGC | 1 cut(s) | 6 |
| CviJI | RGCY | 5 cut(s) | 134, 138, 167, 294, 332 |
| CviKI_1 | RGCY | 5 cut(s) | 134, 138, 167, 294, 332 |
| DdeI | CTNAG | 1 cut(s) | 34 |
| DpnI | GATC | 3 cut(s) | 116, 158, 285 |
| DpnII | GATC | 3 cut(s) | 114, 156, 283 |
| EaeI | YGGCCR | 1 cut(s) | 136 |
| Eco32I | GATATC | 1 cut(s) | 25 |
| EcoRI | GAATTC | 1 cut(s) | 15 |
| EcoRII | CCWGG | 1 cut(s) | 269 |
| EcoRV | GATATC | 1 cut(s) | 25 |
| FaiI | YATR | 6 cut(s) | 51, 67, 143, 200, 227, 249 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 303, 335 |
| FbaI | TGATCA | 1 cut(s) | 283 |
| Fnu4HI | GCNGC | 1 cut(s) | 330 |
| FokI | GGATG | 2 cut(s) | 142, 206 |
| Fsp4HI | GCNGC | 1 cut(s) | 330 |
| FspAI | RTGCGCAY | 1 cut(s) | 5 |
| FspBI | CTAG | 1 cut(s) | 340 |
| FspI | TGCGCA | 1 cut(s) | 5 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 330 |
| HaeIII | GGCC | 1 cut(s) | 138 |
| HapII | CCGG | 1 cut(s) | 127 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HpaII | CCGG | 1 cut(s) | 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 20 |
| HpyAV | CCTTC | 1 cut(s) | 292 |
| HpyCH4III | ACNGT | 3 cut(s) | 75, 174, 278 |
| HpyCH4V | TGCA | 3 cut(s) | 61, 69, 219 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 75 |
| HpyF3I | CTNAG | 1 cut(s) | 34 |
| HspAI | GCGC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 1 cut(s) | 283 |
| Kzo9I | GATC | 3 cut(s) | 114, 156, 283 |
| LmnI | GCTCC | 1 cut(s) | 207 |
| LpnPI | CCDG | 6 cut(s) | 47, 120, 140, 256, 280, 283 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 1 cut(s) | 340 |
| MalI | GATC | 3 cut(s) | 116, 158, 285 |
| MboI | GATC | 3 cut(s) | 114, 156, 283 |
| MboII | GAAGA | 2 cut(s) | 173, 328 |
| MflI | RGATCY | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MluCI | AATT | 2 cut(s) | 15, 90 |
| MmeI | TCCRAC | 1 cut(s) | 52 |
| MnlI | CCTC | 4 cut(s) | 56, 97, 266, 307 |
| MseI | TTAA | 1 cut(s) | 230 |
| MspI | CCGG | 1 cut(s) | 127 |
| MspR9I | CCNGG | 1 cut(s) | 271 |
| MvaI | CCWGG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 75 |
| NdeII | GATC | 3 cut(s) | 114, 156, 283 |
| NsbI | TGCGCA | 1 cut(s) | 5 |
| PkrI | GCNGC | 1 cut(s) | 331 |
| Psp6I | CCWGG | 1 cut(s) | 269 |
| PspGI | CCWGG | 1 cut(s) | 269 |
| PsuI | RGATCY | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 230 |
| SatI | GCNGC | 1 cut(s) | 330 |
| Sau3AI | GATC | 3 cut(s) | 114, 156, 283 |
| ScrFI | CCNGG | 1 cut(s) | 271 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SetI | ASST | 7 cut(s) | 48, 66, 169, 248, 258, 303, 334 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 2 cut(s) | 15, 90 |
| SspMI | CTAG | 1 cut(s) | 340 |
| StyD4I | CCNGG | 1 cut(s) | 269 |
| TaaI | ACNGT | 3 cut(s) | 75, 174, 278 |
| TaqI | TCGA | 1 cut(s) | 117 |
| TasI | AATT | 2 cut(s) | 15, 90 |
| Tru1I | TTAA | 1 cut(s) | 230 |
| Tru9I | TTAA | 1 cut(s) | 230 |
| TseI | GCWGC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 1 cut(s) | 89 |
| XapI | RAATTY | 1 cut(s) | 15 |
| XspI | CTAG | 1 cut(s) | 340 |