Rh5CG019800

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0020319
Physical Location & Seq
Forward (+)
1283097 .. 1292996
9900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG019800.1

Sequence Viewer

Length: 294 bp
ATGAGAATCATGCTCAACTGCTTTGCCTTTCCTCCTCATTGGTCTGAAGTTTCCATTGGTGCCTTTCCTAAAGATGCCTCAGAAGAAGAGTTGACAGAGCTATGCAGTGAAATAGGCAAAATCATTAAGAACTTTGCCACTGGCGAAAGAGCTGTAGTACTCCTGTTCCATCTCCTCGGCTTCCAACAATATGCTATCCGCCAACGGAATACGAGTCTCGACTGGAACTTGCAGCAGCTCTCGAAGCTTGTTGGAATGTTGGATAGGAGAATACGCTGTCGGTCTCGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

97

Amino Acids

11.24

Weight (kDa)

9.02

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g20341
rosa_chinensis RchiOBHm_Chr5g0002311
rosa_roxburghii Rroxscaffold_1G00073560
rosa_samantha Rh1AG029800 Rh5CG019800 Rh5CG549600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 4 cut(s) 100, 152, 238, 247
AluI AGCT 4 cut(s) 100, 152, 238, 247
Alw26I GTCTC 2 cut(s) 221, 288
Ama87I CYCGRG 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 232, 235
AvaI CYCGRG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 244, 247
BccI CCATC 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 221, 288
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 233, 236
BlsI GCNGC 2 cut(s) 234, 237
BmcAI AGTACT 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 145, 227
BseDI CCNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 145, 227
BseRI GAGGAG 2 cut(s) 24, 164
BseXI GCAGC 2 cut(s) 244, 247
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 221, 288
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 285
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 288
BsrI ACTGG 2 cut(s) 145, 227
BssECI CCNNGG 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 221, 288
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 244, 247
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 112, 138
Csp6I GTAC 1 cut(s) 158
CviAII CATG 1 cut(s) 10
CviJI RGCY 5 cut(s) 100, 152, 180, 238, 247
CviKI_1 RGCY 5 cut(s) 100, 152, 180, 238, 247
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 285
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 103, 192
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 233, 236
Fsp4HI GCNGC 2 cut(s) 233, 236
GluI GCNGC 2 cut(s) 233, 236
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 6, 214
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 46, 82
Hpy188III TCNNGA 3 cut(s) 218, 241, 285
Hpy8I GTNNAC 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 105, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 79
Hsp92II CATG 1 cut(s) 13
LpnPI CCDG 3 cut(s) 126, 176, 208
Lsp1109I GCAGC 2 cut(s) 244, 247
LweI GCATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 95, 98
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 3 cut(s) 208, 232, 240
MnlI CCTC 4 cut(s) 42, 45, 88, 185
MseI TTAA 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 244
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 156
PaeR7I CTCGAG 1 cut(s) 285
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 234, 237
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 233, 236
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 1 cut(s) 223
SetI ASST 4 cut(s) 102, 154, 240, 249
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SsiI CCGC 1 cut(s) 199
TaqI TCGA 3 cut(s) 219, 242, 286
TaqII GACCGA 1 cut(s) 270
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 112, 145
TseI GCWGC 2 cut(s) 232, 235
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 2 cut(s) 112, 145
XhoI CTCGAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.