Rroxscaffold_1G00073560

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020319
Physical Location & Seq
Reverse (-)
94367152 .. 94368194
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073560.1

Sequence Viewer

Length: 177 bp
ATGAAGGGGAACCTTCTGCTTCTCTCAGTGAGGAGAAAAAAGAGAATCATGCTCAACTGCCTTCCTCCTCATTGGTCTGAAGTTTCCATTGGTGCCTTTCCTAAAGATGCCTCAGAAGAAGAGTTGACGGAGCTATGCGGTGAAATAGGGCAAGCATTACCCCTGGAACTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

58

Amino Acids

6.48

Weight (kDa)

5.71

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g20341
rosa_chinensis RchiOBHm_Chr5g0002311
rosa_roxburghii Rroxscaffold_1G00073560
rosa_samantha Rh1AG029800 Rh5CG019800 Rh5CG549600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 99
AjnI CCWGG 1 cut(s) 162
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 11, 94
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 39, 126
BseRI GAGGAG 2 cut(s) 46, 57
BshNI GGYRCC 1 cut(s) 92
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 38, 125
BspLI GGNNCC 2 cut(s) 11, 94
BspT107I GGYRCC 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 25, 112
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 153
CviAII CATG 1 cut(s) 49
CviJI RGCY 1 cut(s) 133
CviKI_1 RGCY 1 cut(s) 133
DdeI CTNAG 2 cut(s) 25, 112
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 52
FaiI YATR 2 cut(s) 50, 136
FatI CATG 1 cut(s) 48
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 1 cut(s) 45
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 79, 115
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 23, 71
HpyCH4III ACNGT 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 25, 112
Hsp92II CATG 1 cut(s) 52
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 1 cut(s) 149
LweI GCATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 128, 131
MnlI CCTC 4 cut(s) 24, 75, 78, 121
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 11, 94
PfeI GAWTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 11, 94
ScrFI CCNGG 1 cut(s) 164
SetI ASST 2 cut(s) 15, 135
SfaNI GCATC 1 cut(s) 97
SgeI CNNG 2 cut(s) 61, 164
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 171
TfiI GAWTC 1 cut(s) 45
TscAI CASTG 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.